Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0660.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   3e-29
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)                       28   4.1  
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   7.2  
SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)                    27   7.2  
SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_54600| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  124 bits (300), Expect = 3e-29
 Identities = 55/64 (85%), Positives = 62/64 (96%)
 Frame = -1

Query: 254 LAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNL 75
           LAKSIHHAR+LIRQRHIRVRKQ+VN+PSF+VRLDS KHIDFSL SP+GGGRPGRVKRKN+
Sbjct: 116 LAKSIHHARVLIRQRHIRVRKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNM 175

Query: 74  RKGQ 63
           +KGQ
Sbjct: 176 KKGQ 179



 Score =  113 bits (271), Expect = 8e-26
 Identities = 55/65 (84%), Positives = 59/65 (90%)
 Frame = -2

Query: 448 RKAAREXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 269
           RKAARE LTLE+K P+RLFEGNAL RRLVRIGVLDE + KLDYVLGL+IEDFLERRLQTQ
Sbjct: 51  RKAARELLTLEEKDPRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQ 110

Query: 268 VFKAG 254
           VFK G
Sbjct: 111 VFKLG 115


>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
          Length = 259

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 179 CSQLACGHEYAFAGSKFWHDGWTSP 253
           C++LA    Y++ G +FW + W+ P
Sbjct: 72  CARLAEQKNYSYFGVQFWGECWSGP 96


>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1020

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = -3

Query: 234  CQNFDPAKAYSCPQASCEHP-IIYCAPGLWQAH*LLSEISIRWRSSWTCQEEEPPQG 67
            C NFD    + C   S  H   IYC  G       L  +++     W C+ + P  G
Sbjct: 953  CMNFDGG--FGCRPGSESHAGQIYCCLGALSITHSLHHVNVDMLGWWLCERQLPSGG 1007


>SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)
          Length = 499

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 295 SPQSSDQAHNRVSSVFHPVLQYEPDDVXGHYLRTISWGPS 414
           SP+ +D  H  VSSV    LQ   DD   H L+  ++ PS
Sbjct: 219 SPEVADFFHELVSSVSDISLQLHKDDTT-HMLKDFAFHPS 257


>SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 335 DETRLCAWSED*GLLGASSADAGVQSW 255
           D  + CAWS +   + +SSAD  V  W
Sbjct: 89  DRVKSCAWSPNGEYVASSSADGRVTLW 115


>SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 125 SERSQCACQSPGAQ*MMGCSQLACGHE 205
           S +SQ  C S     ++GC+QL C H+
Sbjct: 226 STQSQLKCYSGHVIPILGCAQLTCKHK 252


>SB_54600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 352 VLDEKQMKLDYVLGL-KIEDFLERRLQTQVFKAGWRS 245
           VL+E   +LD+ LG+ K   FL     T VF +GW+S
Sbjct: 56  VLEEHDQRLDFALGMGKKMGFLTIG-STFVFVSGWKS 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,277,466
Number of Sequences: 59808
Number of extensions: 279025
Number of successful extensions: 683
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)