Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0660.Seq
(449 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 117 5e-27
AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 32 0.17
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 29 2.1
AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic in... 27 4.8
U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical pr... 27 6.3
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 27 6.3
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 27 6.3
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr... 27 6.3
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr... 27 6.3
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr... 27 6.3
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 27 6.3
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 27 6.3
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 27 6.3
U41014-4|AAK32946.3| 557|Caenorhabditis elegans Hypothetical pr... 27 8.3
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 117 bits (281), Expect = 5e-27
Identities = 53/63 (84%), Positives = 60/63 (95%)
Frame = -1
Query: 254 LAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNL 75
LAKSIHHARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ L
Sbjct: 118 LAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTL 177
Query: 74 RKG 66
RKG
Sbjct: 178 RKG 180
Score = 115 bits (276), Expect = 2e-26
Identities = 56/65 (86%), Positives = 59/65 (90%)
Frame = -2
Query: 448 RKAAREXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 269
RKAARE LTLE K PKRLFEGNAL RRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQ
Sbjct: 53 RKAARELLTLEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQ 112
Query: 268 VFKAG 254
VFK G
Sbjct: 113 VFKLG 117
>AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical
protein Y49F6B.9 protein.
Length = 382
Score = 32.3 bits (70), Expect = 0.17
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 179 CSQLACGHEYAFAGSKFWHDGW-TSPASFEHLRLQTTLQEVLNL 307
C + CG E+ F K WH+G T +FE L+ + T E+ +L
Sbjct: 152 CQRPGCGREFCFKCRKVWHEGTRTCSKTFEQLK-KITENEINDL 194
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 176 GCSQLACGHEYAFAGSKFWH 235
GC +L +EY FA K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358
>AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic
initiation factor protein3.I protein.
Length = 327
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 280 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVXGHY--LRTISWGPS 414
+DA + Q+S A + + ++H V + E GH+ + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298
>U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical
protein C48B6.2 protein.
Length = 183
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 254 LAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 120
+ +S+ A L+ Q H+R+ ++V P+F+V S I ++ S
Sbjct: 119 MCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 249 EVHPSCQNFDP------AKAYSCPQASCEHPII 169
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 249 EVHPSCQNFDP------AKAYSCPQASCEHPII 169
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform c protein.
Length = 1576
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 403 KRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 278
KRL EG + + LV I + ++ + K+D+ + F+ ++L
Sbjct: 264 KRLEEGGNINKNLVSIFLRNDLEKKIDFKFSADVYVFINQKL 305
>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform b protein.
Length = 1610
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 403 KRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 278
KRL EG + + LV I + ++ + K+D+ + F+ ++L
Sbjct: 264 KRLEEGGNINKNLVSIFLRNDLEKKIDFKFSADVYVFINQKL 305
>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform a protein.
Length = 1595
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 403 KRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 278
KRL EG + + LV I + ++ + K+D+ + F+ ++L
Sbjct: 264 KRLEEGGNINKNLVSIFLRNDLEKKIDFKFSADVYVFINQKL 305
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 249 EVHPSCQNFDP------AKAYSCPQASCEHPII 169
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 249 EVHPSCQNFDP------AKAYSCPQASCEHPII 169
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 249 EVHPSCQNFDP------AKAYSCPQASCEHPII 169
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>U41014-4|AAK32946.3| 557|Caenorhabditis elegans Hypothetical
protein C06G1.5 protein.
Length = 557
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 227 FWHDG--WTSPASFEHLRLQTTLQEVLNLQTKHIIEFHLFFIQYSN 358
FW+D W+ + E LR LQ + NLQ I L + Y +
Sbjct: 282 FWNDAHSWSGRLTTERLRKGGVLQAIRNLQFDDDINKSLRYFSYEH 327
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,736,213
Number of Sequences: 27780
Number of extensions: 199619
Number of successful extensions: 621
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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