Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0660.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   111   2e-25
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   111   3e-25
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    30   0.63 
At4g28700.1 68417.m04101 ammonium transporter, putative similar ...    29   1.9  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   2.5  
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    27   4.4  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  111 bits (268), Expect = 2e-25
 Identities = 50/66 (75%), Positives = 60/66 (90%)
 Frame = -1

Query: 263 QSWLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKR 84
           +S +AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL SPFGGGRPGRVKR
Sbjct: 117 KSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKR 176

Query: 83  KNLRKG 66
           +N R G
Sbjct: 177 RNERAG 182



 Score = 92.3 bits (219), Expect = 1e-19
 Identities = 44/65 (67%), Positives = 53/65 (81%)
 Frame = -2

Query: 448 RKAAREXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 269
           R AARE LTL++K P+R+FEG AL RR+ R G+LDE Q KLDYVL L +E+FLERRLQT 
Sbjct: 55  RNAARELLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTI 114

Query: 268 VFKAG 254
           VFK+G
Sbjct: 115 VFKSG 119


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  111 bits (266), Expect = 3e-25
 Identities = 50/62 (80%), Positives = 58/62 (93%)
 Frame = -1

Query: 263 QSWLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKR 84
           +S +AKSIHH+R+LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR
Sbjct: 117 KSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKR 176

Query: 83  KN 78
           +N
Sbjct: 177 RN 178



 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 43/65 (66%), Positives = 53/65 (81%)
 Frame = -2

Query: 448 RKAAREXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 269
           R AAR+ LTL++K P+R+FEG AL RR+ R G+LDE Q KLDYVL L +E+FLERRLQT 
Sbjct: 55  RNAARDLLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTI 114

Query: 268 VFKAG 254
           VFK+G
Sbjct: 115 VFKSG 119


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +3

Query: 105 TSTEWRFQREVNVLARVQAHN 167
           +S E RF REVN+++RVQ HN
Sbjct: 57  SSLESRFVREVNMMSRVQHHN 77


>At4g28700.1 68417.m04101 ammonium transporter, putative similar to
           SP|O04161 Ammonium transporter 1, member 2 (LeAMT1;2)
           {Lycopersicon esculentum}; contains Pfam profile
           PF00909: Ammonium Transporter Family
          Length = 504

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 182 SQLACGHEYAFAGSKFWH-DGWTSPASFEHLRLQTTLQEVLNLQTKHII 325
           S    G  Y      FW  DGW SPA  E+L  Q+ + +       H++
Sbjct: 168 SSFLTGLVYPIVSHWFWSSDGWASPARSENLLFQSGVIDFAGSGVVHMV 216


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 338 TDETRLCAWSED*GLLGASSADAGVQSW 255
           T E   CAWS    LL + S DA  + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 370 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 269
           RL  + VLDE++  +D  LG+K     ER++ T+
Sbjct: 473 RLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,257,591
Number of Sequences: 28952
Number of extensions: 187245
Number of successful extensions: 525
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)