Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0659.Seq
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5N8E0 Cluster: Putative uncharacterized protein; n=1; ...    31   8.8  
UniRef50_Q3BAR1 Cluster: Putative uncharacterized protein; n=1; ...    31   8.8  

>UniRef50_A5N8E0 Cluster: Putative uncharacterized protein; n=1;
           Clostridium kluyveri DSM 555|Rep: Putative
           uncharacterized protein - Clostridium kluyveri DSM 555
          Length = 128

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +2

Query: 119 NSLAFVDVSTKHITMELLKLPTAFGILIIYLTTSYLRRIMLCVARH---AIMCHKITS*H 289
           N+L  +  ST +I++ L+ + T  GIL+ Y    Y+R  M  +  H    I+     S H
Sbjct: 61  NNLYHIRFSTGYISLLLMVMVTLIGILMKYFKKIYVRHKMFWLYTHIFLTIILIGTISLH 120

Query: 290 FYRY 301
            +RY
Sbjct: 121 IFRY 124


>UniRef50_Q3BAR1 Cluster: Putative uncharacterized protein; n=1;
           Phalaenopsis aphrodite subsp. formosana|Rep: Putative
           uncharacterized protein - Phalaenopsis aphrodite subsp.
           formosana (Moth orchid)
          Length = 80

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 224 LRRIMLCVARHAIMCHKITS*HFYRYK*CFFK 319
           +R ++LC+ R  ++ H+  S +F RYK CFF+
Sbjct: 47  VRTVLLCL-RAKVLAHESRSIYFIRYKTCFFE 77


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 407,056,015
Number of Sequences: 1657284
Number of extensions: 6997536
Number of successful extensions: 13001
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13001
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)