Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0659.Seq
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   3.1  
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      21   4.0  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      21   4.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   5.4  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    21   5.4  
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    21   5.4  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 201 ISIPNAVGNFNNSIVICLVDTSTKAR 124
           + I N     +N+  I LVD STK R
Sbjct: 438 VQIENLKTTPDNTTFITLVDVSTKRR 463


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 200 IIYLTTSYLRRIMLCVARHAI 262
           +I+  T +LR I+  + +HAI
Sbjct: 370 LIHTDTYFLRDIIFAIRQHAI 390


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 200 IIYLTTSYLRRIMLCVARHAI 262
           +I+  T +LR I+  + +HAI
Sbjct: 372 LIHTDTYFLRDIIFAIRQHAI 392


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 74  VSNLLGLCPFRHQFC 30
           V   LGLC F  +FC
Sbjct: 535 VRAFLGLCNFYRKFC 549


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 200 IIYLTTSYLRRIMLCVARHAI 262
           +I+  T +LR I+  + +HA+
Sbjct: 370 LIHTDTYFLRDIIFAIRQHAV 390


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 200 IIYLTTSYLRRIMLCVARHAI 262
           +I+  T +LR I+  + +HA+
Sbjct: 372 LIHTDTYFLRDIIFAIRQHAV 392


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,183
Number of Sequences: 336
Number of extensions: 2048
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)