Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0659.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   1.8  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   5.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.4  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    25   5.4  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    24   9.4  

>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 358  LILTHWRWSILKIIKFTLGTLLR 426
            L+  H RWS +++ K+ LGT  +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 316 KETSFVSVKVLGSNFVTHNSMPSYAKHYASQITCGKVNYKYTKCCR*LQQF 164
           K+   V+V    + F+  +   +YA     QI    + +K+TKC +  QQF
Sbjct: 76  KKIGPVTVMQFLACFLLSSQNHAYAWSVCRQIPSDDMAFKFTKCFQNSQQF 126


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 67   IYWAYVHFDISSVTND 20
            I+W++V  D+S+ TND
Sbjct: 1138 IFWSFVSKDLSNTTND 1153


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 214 HKLFETHNALRSSACYYVSQNYFLTLLQIQMMFL 315
           H     H  L  +   +   NYF  LLQ+Q + +
Sbjct: 331 HTSLNIHTGLAETLVQHTKNNYFQKLLQLQHLLV 364


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 202 NLPYHKLFETHNALRSSACYYVSQNYFLTLLQI 300
           N PYH+ +E +  +RSS  +    +Y + ++QI
Sbjct: 268 NYPYHEAYEYYYYIRSSFSW--EDSYTIEVVQI 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,990
Number of Sequences: 5004
Number of extensions: 31713
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)