Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0659.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0213 - 2692253-2694562                                           27   9.2  
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28...    27   9.2  

>04_01_0213 - 2692253-2694562
          Length = 769

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 69  RYHNRLGLHLLYYCST 116
           RYHN LG H+L Y S+
Sbjct: 428 RYHNSLGFHMLCYQSS 443


>02_01_0041 +
           279583-281622,281724-282047,282315-282443,282526-282648,
           282768-282923,283224-283349,283426-283560,283815-283942,
           284037-284148,284233-284547,284655-284771,284871-285166,
           285252-285783,287980-288082,288808-288881,288965-289062,
           289340-289380,289977-290032,290170-290244,290377-290469,
           290602-290850,290930-291002,291681-291766,291853-291938,
           292067-292142,292280-292347,292430-292496,292570-292665,
           292741-292843,293214-293309,293396-293466
          Length = 2047

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 118 QQSCLRRRVN*TYHNGIV----EVTYSIWYTYNLPYHKLFETHNALRSSACY 261
           QQ+     V    +NG+V    E  YS+  T +LP H     HN+  ++  Y
Sbjct: 301 QQAVTASAVQDGANNGVVASSAETNYSVKQTEDLPAHNQVAQHNSFSNNYSY 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,737,593
Number of Sequences: 37544
Number of extensions: 185719
Number of successful extensions: 314
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)