Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0659.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_472| Best HMM Match : Cas1p (HMM E-Value=0)                         30   0.77 

>SB_472| Best HMM Match : Cas1p (HMM E-Value=0)
          Length = 932

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 88  VCICFITAALQQSCLRRRVN*TYHNGIVEVTYSIWYTYNLPYHKLFETHNALRSSACYYV 267
           V +CF T   +   L R     +  GI++V + +WY Y     K  ET+NA+R     YV
Sbjct: 551 VAVCFTTRECKDKILNRDQTEEW-KGIMQVLF-VWYHY----FKAAETYNAIRVFIAAYV 604


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,841,932
Number of Sequences: 59808
Number of extensions: 232789
Number of successful extensions: 418
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)