Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0659.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    28   3.4  
At2g38255.1 68415.m04698 expressed protein contains Pfam profile...    27   5.9  

>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
           to pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1406

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 259 SMPSYAKHYASQITCGKVNYKYTKC 185
           ++PS+ KHY     CG+++Y   +C
Sbjct: 626 TVPSFLKHYLVLALCGQMSYGLFRC 650


>At2g38255.1 68415.m04698 expressed protein contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 333

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 319 FKETSFVSVKVLGSNFVTHNSMPSYAKHYASQITCGKVNY 200
           FK + +V VKV  SN+   +     A+ YA    C +++Y
Sbjct: 272 FKSSHYVHVKVKNSNYQLVDIESRKARIYADSYQCYRLSY 311


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,856,941
Number of Sequences: 28952
Number of extensions: 158788
Number of successful extensions: 307
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)