Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0658.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc...    27   2.1  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   4.8  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    25   6.3  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   6.3  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   6.3  

>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
           Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 337 DSDVYYARVIKSLLIEEKGLIMNYYYSVSLNVW 239
           DS+  +AR +K  LI+     + Y YS+  N+W
Sbjct: 33  DSNCEHARFLKHSLIQVSIERIEYLYSIFPNIW 65


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 382 GHYKHSNQRSLFHHGDSDVYYARVIKSLLIEEK 284
           GH  H   RS FH  +SD +   V+ +  I  K
Sbjct: 154 GHKNHLENRSFFHDSESDNFKV-VLSNCAINSK 185


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 487 YVDCHRNS*IINF*VSSEPLSSFDFNILTLFRLEHGHYKHS 365
           +V       +I+F ++   + +++ N+L  FR  HG YK S
Sbjct: 274 FVQAGNGKPVIDFPINH--IINYEINVLGSFRYAHGCYKQS 312


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 427 SSFDFNILTLFRLEHGHYKHSNQRSL 350
           S F F  L L   +HGH+ HS   SL
Sbjct: 212 SQFIFRKLGLHHGKHGHHGHSGSLSL 237


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 313 HGRSRHQNRHGGREIFDCCVCS 378
           H + RH+  H G + F C  C+
Sbjct: 613 HDKRRHEQLHTGIKAFACVTCN 634


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,891
Number of Sequences: 5004
Number of extensions: 33591
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)