Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0658.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0165 - 14758453-14758752,14759991-14760770                       28   3.6  
12_02_0185 + 15050613-15051320,15055443-15055742                       28   4.8  

>12_02_0165 - 14758453-14758752,14759991-14760770
          Length = 359

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = -1

Query: 376 YKHSNQRSLFHHGDSDVYYARVIKSLLIEEKGLIMN 269
           ++H++ RSL+   D D  +++V    ++ +  L+M+
Sbjct: 148 FEHTHGRSLWEVADGDAAFSKVFNDAMVSDSRLVMD 183


>12_02_0185 + 15050613-15051320,15055443-15055742
          Length = 335

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 8/36 (22%), Positives = 23/36 (63%)
 Frame = -1

Query: 376 YKHSNQRSLFHHGDSDVYYARVIKSLLIEEKGLIMN 269
           ++H++ RS++   D D  + +V+ + ++ +  L+M+
Sbjct: 122 FEHTHGRSMWEMADDDAAFNKVVNNRMVSDSRLVMD 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,347,893
Number of Sequences: 37544
Number of extensions: 171438
Number of successful extensions: 253
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)