Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0658.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46445| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       27   6.5  
SB_34021| Best HMM Match : Zip (HMM E-Value=0)                         27   6.5  
SB_41059| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_46445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/19 (47%), Positives = 17/19 (89%)
 Frame = -1

Query: 124 CLSKIKENLTIVIKIQTIF 68
           C+SKI+++  I+IKI+++F
Sbjct: 43  CISKIRQSAEIIIKIRSVF 61


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = -1

Query: 415  FNILTLFRLEHGHYKHSNQRSLFHHGDSDVYYARVIKSLLIEEKG 281
            FN     R  H HY H  Q    HH     Y       L+I+  G
Sbjct: 1029 FNHYHHHRRRHHHYHHQQQHQFHHHHHHTHYNYHYRHFLIIDRPG 1073


>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
          Length = 808

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 385 HGH-YKHSNQRSLFHHGDSDVY 323
           HGH ++H  ++ L+HH D D Y
Sbjct: 366 HGHSHEHEPKQDLYHHEDFDSY 387


>SB_41059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 391 LEHGHYKHSNQRSLFHHGDSDVYYARVIKSLLIE 290
           L H HY   +QR   HH +   Y+ ++I ++ +E
Sbjct: 17  LHHHHYHRQSQRHHQHHNNHYHYHIKLIDTVDLE 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,640,007
Number of Sequences: 59808
Number of extensions: 212604
Number of successful extensions: 440
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)