Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0658.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    34   0.066
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    34   0.066
AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical ...    28   4.3  
AC024821-2|AAP86610.1|  588|Caenorhabditis elegans Hypothetical ...    27   5.7  
AC024821-1|AAK68901.2|  456|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical
           protein F26A3.3 protein.
          Length = 1632

 Score = 33.9 bits (74), Expect = 0.066
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 392 IRTWSLQTQQSKISLPP-WRF*CLLRPCN*KFID-RGKRSNYELLLFSLT*CMAMNKCVV 219
           +R WS+    SK S    W   C+ RP   KFI  R  R   E++ +S    +A+NK  +
Sbjct: 721 LRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSSPVPVALNKPFI 780

Query: 218 NV 213
           N+
Sbjct: 781 NI 782


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
           polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 33.9 bits (74), Expect = 0.066
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 392 IRTWSLQTQQSKISLPP-WRF*CLLRPCN*KFID-RGKRSNYELLLFSLT*CMAMNKCVV 219
           +R WS+    SK S    W   C+ RP   KFI  R  R   E++ +S    +A+NK  +
Sbjct: 721 LRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSSPVPVALNKPFI 780

Query: 218 NV 213
           N+
Sbjct: 781 NI 782


>AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical
           protein ZC581.9 protein.
          Length = 827

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 397 FRLEHGHYKHSNQRSLFHHGDSDV 326
           +RL HGH++  N +S+F + D+ V
Sbjct: 71  YRLTHGHWRIFNSKSVFGNKDASV 94


>AC024821-2|AAP86610.1|  588|Caenorhabditis elegans Hypothetical
           protein Y55B1AR.2b protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 313 VIKSLLIEEKGLIMNYYYSV 254
           VI S+L+E+ GL++NY  SV
Sbjct: 233 VISSVLLEDSGLLLNYQNSV 252


>AC024821-1|AAK68901.2|  456|Caenorhabditis elegans Hypothetical
           protein Y55B1AR.2a protein.
          Length = 456

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 313 VIKSLLIEEKGLIMNYYYSV 254
           VI S+L+E+ GL++NY  SV
Sbjct: 233 VISSVLLEDSGLLLNYQNSV 252


>Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical
           protein C33G3.4 protein.
          Length = 900

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 418 DFNILTLFRLEHGHYKHSNQRSLFHHGDSDVYYARVIKSLLIEE 287
           DFN  T  R  HG +K + +   FH+G   + Y+  I  L I+E
Sbjct: 223 DFNWKT--RFAHGKWKVAFEFDTFHYGARTIEYSVQIPELGIKE 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,739,317
Number of Sequences: 27780
Number of extensions: 176647
Number of successful extensions: 291
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)