Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0657.Seq
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    27   6.3  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    27   6.3  

>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 510 QCPE--HGL*CLLTLKPNSCLAHTCXASNCVS 421
           QCP   HG  C L  K +SC ++ C    C+S
Sbjct: 235 QCPPGYHGSTCELLEKEDSCASNPCSHGVCIS 266


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 510 QCPE--HGL*CLLTLKPNSCLAHTCXASNCVS 421
           QCP   HG  C L  K +SC ++ C    C+S
Sbjct: 235 QCPPGYHGSTCELLEKEDSCASNPCSHGVCIS 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,073,735
Number of Sequences: 27780
Number of extensions: 170803
Number of successful extensions: 305
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)