Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0656.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896...    29   2.1  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    29   2.8  
10_08_0900 - 21436508-21437521                                         29   3.7  
04_03_0150 + 11877714-11878487,11880928-11881245                       28   4.9  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   6.5  
03_06_0180 + 32175658-32178145,32178765-32178808                       27   8.6  

>01_01_1130 +
           8959909-8960396,8960588-8960638,8960736-8960827,
           8960964-8961054,8961877-8961937,8962172-8962216,
           8962318-8962391,8962565-8962637,8963288-8963345,
           8963398-8963468,8963801-8963837,8964040-8964128,
           8964207-8964263,8964366-8964449,8964529-8964627,
           8964765-8964869,8965145-8965216,8965308-8965497,
           8965810-8966207
          Length = 744

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 560 EKRLPTSXEGSRRAN--YPPRHGEVVTKNNDTGLL 462
           EK LP S EGS  ++  YPP HG+V      +G+L
Sbjct: 285 EKFLPLSSEGSTGSHCWYPPGHGDVFFSLCKSGIL 319


>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
            30062391-30062464,30062547-30062629,30063044-30063147,
            30063526-30063665,30063736-30063783,30063939-30063991,
            30064178-30064262,30064346-30064412,30064496-30064606,
            30065262-30065283,30066244-30071110,30071186-30071374,
            30071463-30071577,30072329-30073388,30074247-30074694,
            30074966-30075019,30075105-30076898,30076989-30077949,
            30078271-30078384,30078459-30078613,30078934-30079026,
            30079341-30079613,30093423-30093975,30094465-30094540,
            30094619-30094718
          Length = 4025

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +1

Query: 223  NRRFLERRLTEICSANVSVSPRMRCTDSAAHKCNYELFNRNNFS 354
            N+R  E   + IC   ++    + C D+  H C+  L +  N +
Sbjct: 1263 NKRVCEEWFSRICDPMLNAGLALHCNDAVIHYCSSRLLDIRNLA 1306


>10_08_0900 - 21436508-21437521
          Length = 337

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 287 RGDTDTFAEHISVSRRSKKRRFNIKILSRCSSVSVE 180
           R  TD F EH+ V+ R  + RF++ +  R  + +++
Sbjct: 54  RDTTDAFDEHLEVAVRRYQTRFSLPVTGRLDNATLD 89


>04_03_0150 + 11877714-11878487,11880928-11881245
          Length = 363

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 446 RLRGLVRVPYRYFSSLPPRAGVGNLRACCLPWMWVAVSQA 565
           R R + R P+R  SSL PR   G L +  LP  W+ + +A
Sbjct: 99  RFRAVCR-PWRLSSSLHPRPQDGGLDSRFLPRHWIMLDKA 137


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 340 RNNFSIRYWSWNYRGC 387
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


>03_06_0180 + 32175658-32178145,32178765-32178808
          Length = 843

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/50 (44%), Positives = 26/50 (52%)
 Frame = +2

Query: 401 ALQLFLVKIFKVYSFRLRGLVRVPYRYFSSLPPRAGVGNLRACCLPWMWV 550
           ALQ  LV ++ V + R R  V V    FSSLP  A      AC LPW W+
Sbjct: 76  ALQTRLVGMY-VLARRFRDAVAV----FSSLPRGAA-----ACALPWNWL 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,009,236
Number of Sequences: 37544
Number of extensions: 329866
Number of successful extensions: 731
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)