Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0656.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.011
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2) 29 2.2
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 3.8
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045) 28 6.6
SB_26241| Best HMM Match : B1 (HMM E-Value=2.5) 27 8.7
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/59 (38%), Positives = 30/59 (50%)
Frame = -2
Query: 468 TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGAP 292
T + R ++++ R +WRASL AY K+VAVKKLVV F VG P
Sbjct: 44 TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/42 (50%), Positives = 23/42 (54%)
Frame = -2
Query: 417 RNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGAP 292
R +WRASL AY K+VAVKKLVV F VG P
Sbjct: 14 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/38 (50%), Positives = 20/38 (52%)
Frame = -2
Query: 405 RASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGAP 292
RASL AY K+VAVKKLVV F VG P
Sbjct: 5 RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = -2
Query: 417 RNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGAP 292
R ASL AY K+VAVKKLVV F VG P
Sbjct: 24 RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65
>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
Length = 111
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -2
Query: 357 YTKIVAVKKLVVAFVRRAVGAP 292
Y K+VAVKKLVV F VG P
Sbjct: 88 YIKVVAVKKLVVGFRDGTVGPP 109
>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -2
Query: 357 YTKIVAVKKLVVAFVRRAVGAP 292
Y K+VAVKKLVV F VG P
Sbjct: 89 YIKVVAVKKLVVGFRDGTVGPP 110
>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -2
Query: 357 YTKIVAVKKLVVAFVRRAVGAP 292
Y K+VAVKKLVV F VG P
Sbjct: 17 YIKVVAVKKLVVGFRDGTVGPP 38
>SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 593 NPGFRFRKRE--PEKRLPTSXEGSRRANYPPRHGEVVTKNNDTGLLRGL 453
NPG ++ +++ + ++R +P RHG+ K N TG+ G+
Sbjct: 246 NPGTYLNRKSCSESQQIHHLPQQAKREKFPERHGKAGNKKNPTGVKAGI 294
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 319 CNYELFNRNNFSIRYWSWNYRGCWH 393
C + RN +RYW W R C H
Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCGH 115
>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 ICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYW-SWNY 378
I S S R+RCT S + KC + + F W S+NY
Sbjct: 139 ISSGYYGRSYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180
>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
Length = 1050
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +1
Query: 196 EHRDRILILNRRFLERRLTEICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWN 375
E RD L NR+ E + +V P + S + + + FSI YW W+
Sbjct: 453 ELRDTYLTENRQLNMYDYRENDGIDCAVWPHLYPYHSWSRRSAATSLDTKTFSIEYWRWH 512
Query: 376 YR 381
+R
Sbjct: 513 HR 514
>SB_26241| Best HMM Match : B1 (HMM E-Value=2.5)
Length = 155
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -3
Query: 284 GDTDTFAEHISVSRR--SKKRRFNI--KILSRCSSVSVEVGRQF 165
G T T A+HI+VSRR SK R N KI + S+ + V R++
Sbjct: 55 GRTTTSAKHIAVSRRYNSKDRIINENGKITTSTSAKHIAVSRRY 98
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,322,938
Number of Sequences: 59808
Number of extensions: 377539
Number of successful extensions: 918
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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