Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0656.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical ...    29   1.9  
AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical
           protein H41C03.3 protein.
          Length = 506

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +1

Query: 229 RFLER-RLTEICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 378
           +F ER R    C  NV + P     DSA H  N   +N     I    WNY
Sbjct: 200 QFHERLRAMAACLPNVLLLPDEESVDSAGHNINLAHYNCLRVLINKPGWNY 250


>AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.10 protein.
          Length = 871

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 410 LFLVKIFKVYSFRLRGLVRVPYRYFSSLPPRAGVGNLRACCLPWMWVAVSQAPSS 574
           LFL   F   S   +G  ++   +FS L   +G  + +     W+W++  Q PSS
Sbjct: 706 LFLFISFVRRSAAFKGYEQLVVPFFSRLSSSSGSNSRQEETNEWVWLSQPQPPSS 760


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 346 CCG*KARSCICAPRCRC 296
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


>U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical
           protein F26G1.11 protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 214 LILNRRFLERRLTEICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRY 363
           +I+     + R  E   +N++V      + SA HK NYEL    +F +RY
Sbjct: 83  IIIEHGCTKGRSEEEIQSNINVYSEFPISLSALHKHNYEL--NQDFELRY 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,456,245
Number of Sequences: 27780
Number of extensions: 280012
Number of successful extensions: 643
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)