Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0656.Seq
(598 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 25 0.75
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 23 3.0
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 23 3.0
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 23 3.0
DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex det... 22 5.3
DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex det... 22 5.3
DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex det... 22 5.3
DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex det... 22 5.3
DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex det... 22 5.3
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 21 9.2
DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly pro... 21 9.2
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 21 9.2
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 24.6 bits (51), Expect = 0.75
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 296 HRIRGDTDTFAEHISVSRRSKKRRFNIKILSRCSSVSVE 180
H GD+ ++H VSR S +F + + +S+S++
Sbjct: 705 HSWEGDSFKVSKHEEVSRTSTAGQFPTNVATTVTSMSID 743
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 22.6 bits (46), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
Frame = +2
Query: 8 VAIRMPPVIPINH-----YLGVLKTN 70
+A+ PPV+P NH YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 22.6 bits (46), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
Frame = +2
Query: 8 VAIRMPPVIPINH-----YLGVLKTN 70
+A+ PPV+P NH YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 22.6 bits (46), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
Frame = +2
Query: 8 VAIRMPPVIPINH-----YLGVLKTN 70
+A+ PPV+P NH YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378
>DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 5.3
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 280 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 378
S + S ++ NY +N NN+ ++ NY
Sbjct: 76 SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 5.3
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 280 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 378
S + S ++ NY +N NN+ ++ NY
Sbjct: 76 SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 5.3
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 280 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 378
S + S ++ NY +N NN+ ++ NY
Sbjct: 76 SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 5.3
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 280 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 378
S + S ++ NY +N NN+ ++ NY
Sbjct: 76 SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 5.3
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 280 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 378
S + S ++ NY +N NN+ ++ NY
Sbjct: 76 SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 21.0 bits (42), Expect = 9.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 26 PVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPL 139
P +N KT I R++ ++ YS+S F+P+
Sbjct: 287 PFFCVNIVTSYCKTC-ISGRAFQVLTWLGYSNSAFNPI 323
>DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly
protein 9 protein.
Length = 423
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3
Query: 506 RHGEVVTKNNDT 471
R+ E+V KNNDT
Sbjct: 336 RNIEIVAKNNDT 347
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.0 bits (42), Expect = 9.2
Identities = 15/63 (23%), Positives = 24/63 (38%)
Frame = +1
Query: 190 TEEHRDRILILNRRFLERRLTEICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWS 369
T + R R R E ++ S N S ++ + NY NN+ Y++
Sbjct: 295 TSKERSRDRTERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYN 354
Query: 370 WNY 378
NY
Sbjct: 355 INY 357
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,866
Number of Sequences: 438
Number of extensions: 3689
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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