Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0656.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF...    28   5.4  
At5g67270.1 68418.m08480 microtubule-associated EB1 family prote...    27   9.5  
At3g61660.1 68416.m06910 hypothetical protein                          27   9.5  
At3g12955.1 68416.m01614 auxin-responsive protein-related simila...    27   9.5  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    27   9.5  

>At2g41830.1 68415.m05169 cyclin-related contains Pfam profile
           PF02984: Cyclin, C-terminal domain
          Length = 1025

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 238 ERRLTEICSANVSVSPRM-RCTDSAAHKCNYELFNRNNFSIRYWSWNYRGCWHQTCPPIV 414
           +R++ ++C      + RM + +DS  H+C  EL N N  S +     YR     TC   +
Sbjct: 55  DRKIGKLCEYAAKNAVRMPKISDSLEHRCYKELRNENFHSAKIAMCIYRRLL-VTCKEQI 113

Query: 415 P 417
           P
Sbjct: 114 P 114


>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profiles PF00307: Calponin homology (CH)
           domain, PF03271: EB1 protein
          Length = 329

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 175 PTSTLTEEHRDRILILNRRFLERRLTEICSANVSVSPRMRCTDSAAHKCN 324
           P +  +EE R+ +    +R L   L    +A  ++SPR R +D++  KC+
Sbjct: 272 PIAEGSEERRNSVTESQKRKLIVNLDVDVAAITTLSPRQRLSDASDVKCS 321


>At3g61660.1 68416.m06910 hypothetical protein 
          Length = 129

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 440 SFRLRGLVRVPYRYFSSLPPRAGVGNLRACC 532
           S+ L  L  +  R+F SLP  AG G  + CC
Sbjct: 19  SYELVSLTHIIERHFMSLPSLAGAG--KVCC 47


>At3g12955.1 68416.m01614 auxin-responsive protein-related similar
           to indole-3-acetic acid induced protein arg7 (SP:P32295)
           [Vigna radiata]
          Length = 139

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 236 KKRRFNIKILSRCSSVSVEVGRQFYFEQIR 147
           KK R  + +L RC SVS ++GR + +  +R
Sbjct: 3   KKMRL-MMMLRRCKSVSTQLGRSYSYTSLR 31


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 133 PALSTLICSK*NCRPTSTLTEEH 201
           P+ S L+C K +C   ST TE H
Sbjct: 391 PSASQLLCQKCHCAVKSTSTENH 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,319
Number of Sequences: 28952
Number of extensions: 251908
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)