Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0654.Seq
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY0513...    44   0.002
UniRef50_A7SUZ6 Cluster: Predicted protein; n=2; Eukaryota|Rep: ...    40   0.025
UniRef50_A4S1P1 Cluster: Predicted protein; n=1; Ostreococcus lu...    36   0.54 
UniRef50_Q88GN3 Cluster: Putative uncharacterized protein; n=1; ...    34   1.2  
UniRef50_UPI0000F1F069 Cluster: PREDICTED: hypothetical protein;...    32   5.0  

>UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY05130;
           n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05130 - Plasmodium yoelii yoelii
          Length = 402

 Score = 44.0 bits (99), Expect = 0.002
 Identities = 18/26 (69%), Positives = 22/26 (84%)
 Frame = +2

Query: 83  GKCFR*CSSCDDPRISPLTSQYECPQ 160
           GKCFR C S ++ RISPLTS+Y+CPQ
Sbjct: 259 GKCFRSCLSPENLRISPLTSEYKCPQ 284


>UniRef50_A7SUZ6 Cluster: Predicted protein; n=2; Eukaryota|Rep:
          Predicted protein - Nematostella vectensis
          Length = 79

 Score = 39.9 bits (89), Expect = 0.025
 Identities = 18/23 (78%), Positives = 18/23 (78%)
 Frame = -1

Query: 74 FHQSRTKVRGSKAIRYRPSSNRK 6
          F   RTKVRGSK IRYRPSSN K
Sbjct: 6  FRCQRTKVRGSKTIRYRPSSNHK 28


>UniRef50_A4S1P1 Cluster: Predicted protein; n=1; Ostreococcus
          lucimarinus CCE9901|Rep: Predicted protein -
          Ostreococcus lucimarinus CCE9901
          Length = 72

 Score = 35.5 bits (78), Expect = 0.54
 Identities = 16/23 (69%), Positives = 16/23 (69%)
 Frame = -1

Query: 74 FHQSRTKVRGSKAIRYRPSSNRK 6
          FH  RTKV GSK IRY PS N K
Sbjct: 6  FHCQRTKVGGSKMIRYHPSLNHK 28


>UniRef50_Q88GN3 Cluster: Putative uncharacterized protein; n=1;
           Pseudomonas putida KT2440|Rep: Putative uncharacterized
           protein - Pseudomonas putida (strain KT2440)
          Length = 232

 Score = 34.3 bits (75), Expect = 1.2
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 425 PHXRXYXHVCGAYRR*AGVLKNAGSISKSYRGALR*VSRWAD--NFTLNKLECSK 267
           PH   Y  +CGA R    V   A S++   R AL  + RWA+   + + K +C+K
Sbjct: 2   PHSTVYSPLCGAARLARAVWIGASSLADYARRALGHIPRWAEFLGYIVIKFDCAK 56


>UniRef50_UPI0000F1F069 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 389

 Score = 32.3 bits (70), Expect = 5.0
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 94  SLMFVLRRSKNFTSNVAIRMPPVIPINHYLG 186
           S+M V+ RS  FT    IR+PP+  I+H+LG
Sbjct: 20  SVMGVVERSAVFTRQRDIRLPPIPGISHHLG 50


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,760,867
Number of Sequences: 1657284
Number of extensions: 7377041
Number of successful extensions: 15745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15743
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)