Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0654.Seq
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   1.3  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   4.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   9.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   9.4  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 290 LNKLECSKRAKNLLEYFVHGIIEYDLGSI 204
           L+ L+ ++  KNLLE      + Y+LG +
Sbjct: 387 LSLLQVAQIFKNLLENHYEEFVRYELGEL 415


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 277 SAQSGLKICLNIS 239
           S+Q G K CLN+S
Sbjct: 32  SSQKGQKTCLNLS 44


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 74  FHQSRTKVRGSKAIRYRPSSNRKY 3
           FH    +  G  A  Y PSS+ +Y
Sbjct: 281 FHGKWERETGHNAPLYSPSSDSQY 304


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 88  MLSLMFVLRRSKNFTSNVAIRMPPVIP 168
           MLS    L R     S V + +PP +P
Sbjct: 104 MLSERAALLRGVPTLSPVGVALPPTLP 130


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,741
Number of Sequences: 336
Number of extensions: 1867
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)