Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0654.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0053 + 14109636-14109948,14110075-14110302,14112030-141121...    29   2.3  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    28   3.0  
01_01_0148 - 1337494-1338057                                           27   9.2  

>03_03_0053 +
           14109636-14109948,14110075-14110302,14112030-14112181,
           14112305-14112578,14112687-14112739
          Length = 339

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 157 PVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSRFLARFEHS 279
           P+  +  YLG+   NK+ P+ Y +  C K+ + F     H+
Sbjct: 248 PIGCVPGYLGIFP-NKLSPKDYDVFGCIKWLNDFSKYHNHA 287


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 169 INHYLGVLKTNKIEPRSYSIIPCTKYSSRFLARFE 273
           I H L +LK  KI P   +I  C +YS   ++ F+
Sbjct: 819 ILHALHILKAEKIFPTESNIADCIRYSEMNISGFD 853


>01_01_0148 - 1337494-1338057
          Length = 187

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 68  DENTFGKCFR*CSSCDDP 121
           DE   G+CFR C +C DP
Sbjct: 72  DELEPGQCFRQCEACRDP 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,818,793
Number of Sequences: 37544
Number of extensions: 198337
Number of successful extensions: 398
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)