Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0654.Seq
         (449 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.        29   7.3  
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su...    29   7.3  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    29   7.3  
AB016090-1|BAA83716.1|  802|Homo sapiens RNA binding protein pro...    29   7.3  
AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein pro...    29   7.3  
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro...    29   7.3  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     29   7.3  

>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
          Length = 1022

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 196  TNKIEPR-SYSIIPCTKYSSRFLARFEHS 279
            T++  PR S S+ PC+   SR L R+ HS
Sbjct: 942  TSRTTPRRSRSVSPCSNVESRLLPRYSHS 970


>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator subunit
            SRm300 protein.
          Length = 2296

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 196  TNKIEPR-SYSIIPCTKYSSRFLARFEHS 279
            T++  PR S S+ PC+   SR L R+ HS
Sbjct: 942  TSRTTPRRSRSVSPCSNVESRLLPRYSHS 970


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
          Length = 2752

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 196  TNKIEPR-SYSIIPCTKYSSRFLARFEHS 279
            T++  PR S S+ PC+   SR L R+ HS
Sbjct: 942  TSRTTPRRSRSVSPCSNVESRLLPRYSHS 970


>AB016090-1|BAA83716.1|  802|Homo sapiens RNA binding protein
           protein.
          Length = 802

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 196 TNKIEPR-SYSIIPCTKYSSRFLARFEHS 279
           T++  PR S S+ PC+   SR L R+ HS
Sbjct: 68  TSRTTPRRSRSVSPCSNVESRLLPRYSHS 96


>AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein
           protein.
          Length = 956

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 196 TNKIEPR-SYSIIPCTKYSSRFLARFEHS 279
           T++  PR S S+ PC+   SR L R+ HS
Sbjct: 907 TSRTTPRRSRSVSPCSNVESRLLPRYSHS 935


>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
           protein.
          Length = 1262

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 196 TNKIEPR-SYSIIPCTKYSSRFLARFEHS 279
           T++  PR S S+ PC+   SR L R+ HS
Sbjct: 732 TSRTTPRRSRSVSPCSNVESRLLPRYSHS 760


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 196  TNKIEPR-SYSIIPCTKYSSRFLARFEHS 279
            T++  PR S S+ PC+   SR L R+ HS
Sbjct: 990  TSRTTPRRSRSVSPCSNVESRLLPRYSHS 1018


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,086,263
Number of Sequences: 237096
Number of extensions: 1118960
Number of successful extensions: 1942
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1942
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)