Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0654.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43930.1 68415.m05460 protein kinase family protein contains ...    28   2.5  
At4g10890.1 68417.m01772 expressed protein                             27   4.4  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   4.4  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    27   5.9  
At5g38320.1 68418.m04625 expressed protein  ; expression support...    27   7.7  
At3g11570.1 68416.m01413 expressed protein similar to At5g06230        27   7.7  

>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 208 EPRSYSIIPCTKYSSRFLARFEHSNLFKVKLSAHLDTHR 324
           EP    ++ C K S  F + FEH  LFK  +    + H+
Sbjct: 63  EPHIVLLLQCRKKSWCFASEFEHLKLFKGYIDEDEERHK 101


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 113 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSN 12
           ++T I   +C RC+H S R K+R S   R   S++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNS 228


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 76  HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 210
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 263 PALSTLICSK*NCRPTSTLTEEH 331
           P+ S L+C K +C   ST TE H
Sbjct: 391 PSASQLLCQKCHCAVKSTSTENH 413


>At5g38320.1 68418.m04625 expressed protein  ; expression supported
           by MPSS
          Length = 212

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 115 RSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSI-IPCTKYSS 252
           RSK       +  P +IPI  +  VL+  +I  + Y + +P   Y+S
Sbjct: 85  RSKTDKYKTGLPRPEIIPIEDFEPVLEIEEIGDQEYEVKLPLLPYNS 131


>At3g11570.1 68416.m01413 expressed protein similar to At5g06230
          Length = 427

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 265 RFEHSNLFKVKLSAHLDTHRRAPR*DFDIEPAFFRTPAHRRYAPQTCXYXRXCGAPDS 438
           R+EHS +  + ++ +L   R+      D  P+ +R P     APQ C +    G PD+
Sbjct: 360 RYEHSKVKFLNIT-YLTEFRK------DAHPSRYREPGTPEDAPQDCSHWCLPGVPDT 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,737,906
Number of Sequences: 28952
Number of extensions: 164166
Number of successful extensions: 355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)