Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0653.Seq
         (429 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   3.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   5.0  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    20   8.7  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 116 LNLMILKLTSREITSNIPESLSRVTV 193
           ++ + L+  + E T+N PE  + VTV
Sbjct: 111 ISWIFLETVANENTTNCPEQKNTVTV 136


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
          protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 49 DDDLFPGFSDT 81
          D +LFPGF  T
Sbjct: 13 DSELFPGFGST 23


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 293 IFVFHDLFFDGFSSFVN 243
           + +F  +FF  FS FVN
Sbjct: 5   VILFFGVFFIIFSDFVN 21


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,329
Number of Sequences: 336
Number of extensions: 1536
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)