Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0653.Seq
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39270.2 68417.m05561 leucine-rich repeat transmembrane prote...    31   0.33 
At4g39270.1 68417.m05562 leucine-rich repeat transmembrane prote...    31   0.33 
At3g53240.1 68416.m05868 leucine-rich repeat family protein cont...    28   2.3  
At3g05360.1 68416.m00584 disease resistance family protein / LRR...    28   3.1  
At1g80080.1 68414.m09374 leucine-rich repeat family protein cont...    28   3.1  
At2g13790.1 68415.m01522 leucine-rich repeat family protein / pr...    27   5.4  
At3g23460.1 68416.m02956 cyclopropane fatty acid synthase-relate...    27   7.1  
At5g53080.1 68418.m06594 kinesin light chain-related low similar...    26   9.4  

>At4g39270.2 68417.m05561 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 694

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +2

Query: 110 SLLNLMILKLTSREITSNIPESLSRVT 190
           SLL L +L L+S  IT  IPESL+R++
Sbjct: 124 SLLTLEVLDLSSCSITGTIPESLTRLS 150


>At4g39270.1 68417.m05562 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 864

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +2

Query: 110 SLLNLMILKLTSREITSNIPESLSRVT 190
           SLL L +L L+S  IT  IPESL+R++
Sbjct: 124 SLLTLEVLDLSSCSITGTIPESLTRLS 150


>At3g53240.1 68416.m05868 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 891

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 77  IRSRCQRYQR*SLLNLMILKLTSREITSNIPESL 178
           ++ R   Y R +L  +  L L+S E++ NIPE L
Sbjct: 689 VKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEEL 722


>At3g05360.1 68416.m00584 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to
           elicitor-inducible LRR receptor-like protein EILP
           [Nicotiana tabacum] gi|6635236|dbj|BAA88636; similar to
           Cf-2.2 [Lycopersicon pimpinellifolium]
           gi|1184077|gb|AAC15780
          Length = 786

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 113 LLNLMILKLTSREITSNIPESLSRVT 190
           L  L +L L+    TSNIP+SL+ +T
Sbjct: 621 LKELRLLNLSGNSFTSNIPQSLANLT 646


>At1g80080.1 68414.m09374 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; contains some similarity to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 496

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +2

Query: 113 LLNLMILKLTSREITSNIPESLSRV 187
           L NLMIL L++  I  +IP+SL+R+
Sbjct: 326 LKNLMILVLSNTNIQGSIPKSLTRL 350


>At2g13790.1 68415.m01522 leucine-rich repeat family protein /
           protein kinase family protein 
          Length = 620

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 113 LLNLMILKLTSREITSNIPESL 178
           LLNL  L+L S  IT  IPE L
Sbjct: 98  LLNLQYLELYSNNITGEIPEEL 119


>At3g23460.1 68416.m02956 cyclopropane fatty acid synthase-related
           similar to cyclopropane synthase [Sterculia foetida]
           GI:21069167
          Length = 305

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 113 LLNLMILKLTSREITSNIPESLSRVT 190
           LLNL+++ + S+E+ SN+ E   R T
Sbjct: 98  LLNLIMILIASKELNSNLAEKRGRWT 123


>At5g53080.1 68418.m06594 kinesin light chain-related low similarity
           to kinesin light chain from [Plectonema boryanum]
           GI:2645229, [Loligo pealei] GI:403179; contains Pfam
           profile PF00515: TPR Domain
          Length = 564

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 299 LNKSSDYSRIKKFKSKILFHKRGF*IVKNK 388
           ++  S YS I KF++ IL H+R   I++N+
Sbjct: 190 MHVGSMYSVIGKFENAILVHQRAIRILENR 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,701,817
Number of Sequences: 28952
Number of extensions: 130693
Number of successful extensions: 364
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)