Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0652.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    25   0.28 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   1.5  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    22   2.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    20   7.8  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    20   7.8  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 297 LMVLYKSHIWDCSHFXQPLKI*LNYTL-WMICNHTIFANIHSMFETKLICHSSLG 136
           L++L+ +++W  S   +  +  +  +  + +CN TIF   HS+   K    +SLG
Sbjct: 126 LLLLFDAYLWISSVGVRMFQYYIGRSFTYYVCNTTIFLIFHSVLPIKRF-FTSLG 179


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 264 NPICEICTKPLNEGECI 314
           NP+  IC KP  +  C+
Sbjct: 454 NPLDAICNKPRKDAVCV 470


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 173 CSKQN*FVTRLLGHLHKPILVLFF 102
           C+  N FV  L+G LH  I ++FF
Sbjct: 161 CTSMN-FVL-LIGDLHTSIYIIFF 182


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/41 (21%), Positives = 16/41 (39%)
 Frame = -1

Query: 219  LWMICNHTIFANIHSMFETKLICHSSLGTLTQAHFGFIFWY 97
            +W+   +  F  I    +   ICH    T+ +      F+Y
Sbjct: 991  VWLHLVYISFLGIICAADVFYICHVCYATIQEVRAKIYFFY 1031


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/41 (21%), Positives = 16/41 (39%)
 Frame = -1

Query: 219 LWMICNHTIFANIHSMFETKLICHSSLGTLTQAHFGFIFWY 97
           +W+   +  F  I    +   ICH    T+ +      F+Y
Sbjct: 272 VWLHLVYISFLGIICAADVFYICHVCYATIQEVRAKIYFFY 312


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,688
Number of Sequences: 336
Number of extensions: 2035
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)