Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0652.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   0.81 
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   3.3  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    25   3.3  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   5.7  
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    25   5.7  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   5.7  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    25   5.7  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    24   7.6  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    24   10.0 
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    24   10.0 
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    24   10.0 
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    24   10.0 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   10.0 

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 322 TCYHVFHWSC 351
           TCYHVFH SC
Sbjct: 215 TCYHVFHLSC 224


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 195 IFANIHSMFETKLICHSS 142
           IF N HSM++ KL  H++
Sbjct: 164 IFCNFHSMYQIKLSIHAT 181


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +1

Query: 178 VNVCE-NCMVTNHPKCIIQ 231
           VNVC  NCM  N PK I +
Sbjct: 223 VNVCYINCMTINEPKAIFE 241


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 198 YGYKSSKVYNSVISSMAAXS-DYNPICEICTK 290
           YGY  S ++ SVISSM + + +   +C +  K
Sbjct: 44  YGYDMSSLFPSVISSMESNNLELKKLCYLYLK 75


>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 148 LVSWDTYTSPFWF 110
           L+SW  YT+P WF
Sbjct: 50  LISWLQYTNPNWF 62


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 231 LNYTLWMICNHTIFANIHSMFETKLICHSSLGTLTQAHFGFI 106
           +NY L    + T F  I       +I  S L ++  AHF FI
Sbjct: 502 INYLLRTDIDSTFFTTIFLNTYASMISSSDLFSILGAHFRFI 543


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 196 NFRKHSLXVRNKIDLSLVSWDTYTS 122
           +F KH L V +    SL++W   TS
Sbjct: 142 DFEKHILRVSHNAHRSLINWQNSTS 166


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 240 SMAAXSDYNPICEICTKPLN 299
           S ++  + +P CEIC  P+N
Sbjct: 86  SYSSNKEDHPPCEICNSPMN 105


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 105 FWYPAFTLKRNYLNSKHKIVTESSI 31
           FW   F L+RN L  ++K ++ +S+
Sbjct: 76  FWICPFCLQRNMLPPQYKDISNTSL 100


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 301 KENAYXLTCYHVFHWSC 351
           K N Y L   H+F W+C
Sbjct: 517 KTNDYELEVQHLFTWTC 533


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 94  RIPKNKTKMGLCKCPKRRVTNQFCFEHXVNVCENCM 201
           R  + +TK G   C KRR+    C E    +C NC+
Sbjct: 36  RQARKRTKTGCLTCRKRRIK---CDERK-PICYNCI 67


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = +3

Query: 198 YGYKSSKVYNSVISSMAAXSDYNPICEICTKPLN---EGECIXTYLLPC 335
           +G   +  +N      +  ++ N +C+ C KP+N   E  C   Y   C
Sbjct: 287 FGSNDNHSHNKKRRLSSLSTNNNHLCDNCHKPVNCEVEDTCKEAYCTKC 335


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +3

Query: 222 YNSVISSMAAXSDYNPICEICTKPLNEGECIXTYLLPCXSLV 347
           +N VI+ +   +D +P   +      + +C+  YL+   +L+
Sbjct: 312 FNDVITGVRVCADSSPQAIVHMDEFEDTDCLIDYLVATLALI 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,841
Number of Sequences: 5004
Number of extensions: 32346
Number of successful extensions: 94
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)