Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0652.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1146 + 9087154-9087768                                           28   2.4  
12_01_0670 + 5698852-5699061,5700894-5701316                           26   9.5  

>01_01_1146 + 9087154-9087768
          Length = 204

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 304 ENAYXLTCYHVFHWSCAESKXRALPRTTLP 393
           E    L C HVFH +C ++    LPR T P
Sbjct: 114 EEVRELRCRHVFHRACLDA-WLVLPRATCP 142


>12_01_0670 + 5698852-5699061,5700894-5701316
          Length = 210

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 237 SSMAAXSDYNPICEICTKPLNEGECIXTYLLPCXS 341
           S+ A   D++P C+IC +      C+    L C S
Sbjct: 54  SAAAGDDDHHPTCDICQEKTGYFFCLEDRALLCRS 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,682,317
Number of Sequences: 37544
Number of extensions: 176349
Number of successful extensions: 419
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)