Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0652.Seq
(399 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3355| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.20
SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.26
SB_20238| Best HMM Match : Toxin_8 (HMM E-Value=0.66) 30 0.60
SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.80
SB_26921| Best HMM Match : bZIP_1 (HMM E-Value=2.6) 30 0.80
SB_30581| Best HMM Match : CX (HMM E-Value=0.73) 28 3.2
SB_49183| Best HMM Match : CRA_rpt (HMM E-Value=3.7) 27 4.3
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_6577| Best HMM Match : E_raikovi_mat (HMM E-Value=4.4) 27 4.3
SB_38291| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_57273| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_53670| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37) 27 5.6
SB_51909| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37) 27 5.6
SB_33256| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_31559| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37) 27 5.6
SB_21527| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_11924| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37) 27 5.6
SB_4537| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37) 27 5.6
SB_1499| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_49451| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37) 27 5.6
SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28) 27 5.6
SB_9001| Best HMM Match : PHD (HMM E-Value=0.00096) 27 5.6
SB_6668| Best HMM Match : PHD (HMM E-Value=0.00096) 27 5.6
SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72) 27 7.4
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_25592| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05) 26 9.8
SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05) 26 9.8
SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05) 26 9.8
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0) 26 9.8
SB_3354| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18) 26 9.8
SB_30957| Best HMM Match : DEAD (HMM E-Value=4.3) 26 9.8
SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_10962| Best HMM Match : PHD (HMM E-Value=5.3e-05) 26 9.8
>SB_3355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 31.9 bits (69), Expect = 0.20
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 112 TKMGLC-KCPKRRVTNQFCFEHXVNVCENCMVTNH 213
T+ C KC K N +C E V +CE+C+V+ H
Sbjct: 82 TRKDKCGKCDKINELNSYCVECSVFMCEDCLVSIH 116
>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 31.5 bits (68), Expect = 0.26
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = -1
Query: 228 NYTLWMICNHTIFANIHSMFETKLICHSSLGTLTQAHFGFIFWYPAFTLKRNY-LNS--K 58
N+TL +CNHT+ + TK C+ +L T+ H W T N+ LN+
Sbjct: 174 NHTLTTMCNHTLTTMYNHALTTK--CNHTLTTMCDHHVLTTMWNHTLTTMYNHTLNTMCN 231
Query: 57 HKIVT 43
H + T
Sbjct: 232 HTLTT 236
>SB_20238| Best HMM Match : Toxin_8 (HMM E-Value=0.66)
Length = 491
Score = 30.3 bits (65), Expect = 0.60
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 255 SDYNPICEICTKPLNEGECI 314
SDYNP+C +C L++G+ +
Sbjct: 272 SDYNPVCTLCNGNLSDGDVV 291
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +1
Query: 214 PKCIIQSYLQWLXEVTTIPYVRFVQNH*MKENAYXLTCY 330
P CI++SYL WL + P + + L CY
Sbjct: 258 PPCIVKSYLHWLQDSDYNPVCTLCNGNLSDGDVVRLICY 296
>SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 29.9 bits (64), Expect = 0.80
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +1
Query: 94 RIPKNKTKMGLCKCPKRRVTNQFCFEHXVNVCENCM-VTNHPKCIIQSYLQWLXEVTTIP 270
R + K ++ C + + +CFE VC NC+ + +H K + + L E
Sbjct: 89 RCHRGKLELACNSCELNEIASSYCFECKCLVCVNCIEIHDHMKSMKSHRIIGLKETHPDD 148
Query: 271 YVRFVQ 288
+ VQ
Sbjct: 149 LIEIVQ 154
>SB_26921| Best HMM Match : bZIP_1 (HMM E-Value=2.6)
Length = 418
Score = 29.9 bits (64), Expect = 0.80
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 180 ECLRKLYGYKSSKVYNSVISSMAAXSDYNPICEICTK 290
EC KL+G+ +K+Y V++ ++ S+ + + CTK
Sbjct: 304 ECYEKLHGHIGTKLYKEVLTRLSHLSNSSEDQDDCTK 340
>SB_30581| Best HMM Match : CX (HMM E-Value=0.73)
Length = 198
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -1
Query: 207 CNHTIFANIHSMFETKLICHSSLGTLTQA 121
CN FANI SM + LIC L TL A
Sbjct: 129 CNSLAFANISSMLCSSLICWRLLITLRVA 157
>SB_49183| Best HMM Match : CRA_rpt (HMM E-Value=3.7)
Length = 180
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 180 ECLRKLYGYKSSKVYNSVISSMAAXSDYNPICEICTK 290
ECL KL+G +K+ V++ ++ S+ + + CTK
Sbjct: 87 ECLEKLHGDSGTKLEKEVLTRLSDLSNSSEDQDDCTK 123
>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4994
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 181 SLXVRNKIDLSLVSWDTYTSPFWF-YFLVSGIYFKTKLFK 65
+L + I +S +SW++ T FWF FL F LF+
Sbjct: 4899 NLAIEGTIIMSEISWESSTLGFWFTEFLERNSQFSAWLFQ 4938
>SB_6577| Best HMM Match : E_raikovi_mat (HMM E-Value=4.4)
Length = 165
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 228 NYTLWMICNHTIFANIHSMFETKLICHSSLGTL 130
N+TL +CNHT+ A + TK C+ +L T+
Sbjct: 27 NHTLTAMCNHTLTAMCNHTLTTK--CNHTLTTM 57
>SB_38291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 181 SLXVRNKIDLSLVSWDTYTSPFWF-YFLVSGIYFKTKLFK 65
+L + I +S +SW++ T FWF FL F LF+
Sbjct: 93 NLAIEGTIIMSEISWESSTLGFWFTEFLERNSQFSAWLFQ 132
>SB_57273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 180 ECLRKLYGYKSSKVYNSVISSMAAXSDYNPICEICTK 290
ECL KL+G +K+ V++ ++ S+ + + CTK
Sbjct: 11 ECLEKLHGDSGTKLDKEVLARLSDLSNSSEDQDDCTK 47
>SB_53670| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37)
Length = 428
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 180 ECLRKLYGYKSSKVYNSVISSMAAXSDYNPICEICTK 290
ECL KL+G +K+ V++ ++ S+ + + CTK
Sbjct: 281 ECLEKLHGDSGTKLDKEVLTRLSDLSNSSEDQDDCTK 317
>SB_51909| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37)
Length = 575
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 180 ECLRKLYGYKSSKVYNSVISSMAAXSDYNPICEICTK 290
ECL KL+G +K+ V++ ++ S+ + + CTK
Sbjct: 428 ECLEKLHGDSGTKLDKEVLTRLSDLSNSSEDQDDCTK 464
>SB_33256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 180 ECLRKLYGYKSSKVYNSVISSMAAXSDYNPICEICTK 290
ECL KL+G +K+ V++ ++ S+ + + CTK
Sbjct: 392 ECLEKLHGDSGTKLDKEVLTRLSDLSNSSEDQDDCTK 428
>SB_31559| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37)
Length = 554
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 180 ECLRKLYGYKSSKVYNSVISSMAAXSDYNPICEICTK 290
ECL KL+G +K+ V++ ++ S+ + + CTK
Sbjct: 407 ECLEKLHGDSGTKLDKEVLTRLSDLSNSSEDQDDCTK 443
>SB_21527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 527
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 180 ECLRKLYGYKSSKVYNSVISSMAAXSDYNPICEICTK 290
ECL KL+G +K+ V++ ++ S+ + + CTK
Sbjct: 380 ECLEKLHGDSGTKLDKEVLTRLSDLSNSSEDQDDCTK 416
>SB_11924| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37)
Length = 511
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 180 ECLRKLYGYKSSKVYNSVISSMAAXSDYNPICEICTK 290
ECL KL+G +K+ V++ ++ S+ + + CTK
Sbjct: 365 ECLEKLHGDSGTKLDKEVLTRLSDLSNSSEDQDDCTK 401
>SB_4537| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37)
Length = 593
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 180 ECLRKLYGYKSSKVYNSVISSMAAXSDYNPICEICTK 290
ECL KL+G +K+ V++ ++ S+ + + CTK
Sbjct: 446 ECLEKLHGDSGTKLDKEVLTRLSDLSNSSEDQDDCTK 482
>SB_1499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 180 ECLRKLYGYKSSKVYNSVISSMAAXSDYNPICEICTK 290
ECL KL+G +K+ V++ ++ S+ + + CTK
Sbjct: 201 ECLEKLHGDSGTKLDKEVLTRLSDLSNSSEDQDDCTK 237
>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 27.1 bits (57), Expect = 5.6
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 214 PKCIIQSYLQWLXEVTTIPYVRFVQ 288
P+ +I +W+ E+ T+P + F+Q
Sbjct: 2 PRHLISDAHEWINEIPTVPIIEFLQ 26
>SB_49451| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37)
Length = 415
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 180 ECLRKLYGYKSSKVYNSVISSMAAXSDYNPICEICTK 290
ECL KL+G +K+ V++ ++ S+ + + CTK
Sbjct: 268 ECLEKLHGDSGTKLDKEVLTRLSDLSNSSEDQDDCTK 304
>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
Length = 711
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 262 TIPYVRFVQNH*MKENAYXLTCYHVFHWSC 351
+IP+ + +KEN + YH FH C
Sbjct: 555 SIPHFEHPSHRLLKENGFTQQLYHKFHLKC 584
>SB_9001| Best HMM Match : PHD (HMM E-Value=0.00096)
Length = 345
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 100 PKNKTKMGLCKCPKRRVTNQFCFEHXVNVCENCMVTNHPKCI 225
P K GLCK P + +NQ + C++C + NH KC+
Sbjct: 92 PAWKNPYGLCKKPVK--SNQRGLQ-----CDSCNIWNHAKCM 126
>SB_6668| Best HMM Match : PHD (HMM E-Value=0.00096)
Length = 210
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 100 PKNKTKMGLCKCPKRRVTNQFCFEHXVNVCENCMVTNHPKCI 225
P K GLCK P + +NQ + C++C + NH KC+
Sbjct: 92 PAWKNPYGLCKKPVK--SNQRGLQ-----CDSCNIWNHAKCM 126
>SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)
Length = 1161
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 255 SDYNPICEICTKPLNEGEC 311
SDY +CE C KP + EC
Sbjct: 866 SDYRCLCEDCGKPYSTCEC 884
>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 26.6 bits (56), Expect = 7.4
Identities = 6/28 (21%), Positives = 15/28 (53%)
Frame = -1
Query: 156 ICHSSLGTLTQAHFGFIFWYPAFTLKRN 73
+CH + + H+ ++ W P +++ N
Sbjct: 272 VCHPMMMFVDPVHYSYVVWLPIYSINLN 299
>SB_25592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 255 SDYNPICEICTKPLNEGEC 311
SDY +CE C KP + EC
Sbjct: 414 SDYRCLCEDCGKPYSTCEC 432
>SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 790
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 100 PKNKTKMGLCKCPKRRVTNQFCFEHXVNVCENCMVTNHPKCI 225
P K GLCK P + +NQ + C++C + NH KC+
Sbjct: 88 PAWKYPCGLCKKPVK--SNQRGLQ-----CDSCNIWNHAKCM 122
>SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 255 SDYNPICEICTKPLNEGEC 311
SDY ICE C KP + +C
Sbjct: 525 SDYRCICEDCGKPYSTCDC 543
>SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 696
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 100 PKNKTKMGLCKCPKRRVTNQFCFEHXVNVCENCMVTNHPKCI 225
P K GLCK P + +NQ + C++C + NH KC+
Sbjct: 92 PAWKYPCGLCKKPVK--SNQRGLQ-----CDSCNIWNHAKCM 126
>SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 822
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 100 PKNKTKMGLCKCPKRRVTNQFCFEHXVNVCENCMVTNHPKCI 225
P K GLCK P + +NQ + C++C + NH KC+
Sbjct: 92 PAWKYPCGLCKKPVK--SNQRGLQ-----CDSCNIWNHAKCM 126
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 127 CKCPKRRVTNQFCFEHXVNVCENCM 201
C C R + CF+ CENC+
Sbjct: 97 CACKNRLIAIAHCFDCSRYFCENCL 121
>SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1126
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 100 PKNKTKMGLCKCPKRRVTNQFCFEHXVNVCENCMVTNHPKCI 225
P K GLCK P + +NQ + C++C + NH KC+
Sbjct: 74 PAWKYPCGLCKKPVK--SNQRGLQ-----CDSCNIWNHAKCM 108
>SB_3354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 26.2 bits (55), Expect = 9.8
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +1
Query: 133 CPKRRVTNQFCFEHXVNVCENCMVTNH 213
C ++ + N FCF +CE C+ ++
Sbjct: 101 CHRKVLLNSFCFACDTFMCEECLTAHN 127
>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2123
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 100 PKNKTKMGLCKCPKRRVTNQFCFEHXVNVCENCMVTNHPKCI 225
P K GLCK P + +NQ + C++C + NH KC+
Sbjct: 1239 PAWKYPCGLCKKPVK--SNQRGLQ-----CDSCNIWNHAKCM 1273
>SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18)
Length = 1061
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 100 PKNKTKMGLCKCPKRRVTNQFCFEHXVNVCENCMVTNHPKCI 225
P K GLCK P + +NQ + C++C + NH KC+
Sbjct: 160 PAWKYPCGLCKKPVK--SNQRGLQ-----CDSCNIWNHAKCM 194
>SB_30957| Best HMM Match : DEAD (HMM E-Value=4.3)
Length = 314
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 255 SDYNPICEICTKPLNEGEC 311
SDY ICE C KP + +C
Sbjct: 185 SDYRCICEDCGKPYSTCDC 203
>SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 913
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 100 PKNKTKMGLCKCPKRRVTNQFCFEHXVNVCENCMVTNHPKCI 225
P K GLCK P + +NQ + C++C + NH KC+
Sbjct: 71 PAWKYPCGLCKKPVK--SNQRGLQ-----CDSCNIWNHAKCM 105
>SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1022
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 100 PKNKTKMGLCKCPKRRVTNQFCFEHXVNVCENCMVTNH 213
P+ K CK K + +C + V +C +C V +H
Sbjct: 535 PREMAKKMYCKQHKDEEMSFYCEDCCVMLCRDCTVLDH 572
>SB_10962| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 521
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 100 PKNKTKMGLCKCPKRRVTNQFCFEHXVNVCENCMVTNHPKCI 225
P K GLCK P + +NQ + C++C + NH KC+
Sbjct: 92 PAWKYPCGLCKKPVK--SNQRGLQ-----CDSCNIWNHAKCM 126
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,984,425
Number of Sequences: 59808
Number of extensions: 232410
Number of successful extensions: 953
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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