Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0652.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006768-2|AAF60574.1|  309|Caenorhabditis elegans Hypothetical ...   108   1e-24
AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical...    33   0.100
U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.           28   2.1  
U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein rec...    28   2.1  
AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor...    28   2.1  
AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor medi...    28   2.1  
AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical ...    27   3.7  
AC103567-8|AAL35729.1|  305|Caenorhabditis elegans Hypothetical ...    27   5.0  
U64605-3|AAF98605.3|  423|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ...    27   6.5  
AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AC006768-2|AAF60574.1|  309|Caenorhabditis elegans Hypothetical
           protein Y45G12B.2a protein.
          Length = 309

 Score =  108 bits (260), Expect = 1e-24
 Identities = 44/92 (47%), Positives = 55/92 (59%)
 Frame = +1

Query: 118 MGLCKCPKRRVTNQFCFEHXVNVCENCMVTNHPKCIIQSYLQWLXEVTTIPYVRFVQNH* 297
           MGLCKCPKR+VTN FC+EH VNVCE C+V NHP C++QSYL WL +    P     +   
Sbjct: 1   MGLCKCPKRKVTNLFCYEHRVNVCEFCLVDNHPNCVVQSYLTWLTDQDYDPNCSLCKTTL 60

Query: 298 MKENAYXLTCYHVFHWSCAESKXRALPRTTLP 393
            + +   L C H+ HW C +      P TT P
Sbjct: 61  AEGDTIRLNCLHLLHWKCFDEWAANFPATTAP 92


>AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical
           protein Y102A5C.21 protein.
          Length = 355

 Score = 32.7 bits (71), Expect = 0.100
 Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 195 LYGYKSSKVYNSVISSMAAXSDYNPICEICT-KPLNEGECIXTYLLPC 335
           LYGY S KV NSVI  +        IC IC  KP      I    L C
Sbjct: 282 LYGYYSQKVMNSVICFIQNHGIVESICLICVHKPYRNAIAIKIKSLKC 329


>U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.
          Length = 925

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 97  IPKNKTKMGLCKCPKRRVTNQFCFEHXVNVCEN-CMVTNH-PKCIIQ 231
           IP N T  G+ +CP     ++ C E     C++ CM T H  +CI Q
Sbjct: 279 IPMNATCNGIKECPLGDDESKHCSECARKRCDHTCMNTPHGARCICQ 325


>U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein
           receptor precursor protein.
          Length = 925

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 97  IPKNKTKMGLCKCPKRRVTNQFCFEHXVNVCEN-CMVTNH-PKCIIQ 231
           IP N T  G+ +CP     ++ C E     C++ CM T H  +CI Q
Sbjct: 279 IPMNATCNGIKECPLGDDESKHCSECARKRCDHTCMNTPHGARCICQ 325


>AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor
           RME-2 protein.
          Length = 925

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 97  IPKNKTKMGLCKCPKRRVTNQFCFEHXVNVCEN-CMVTNH-PKCIIQ 231
           IP N T  G+ +CP     ++ C E     C++ CM T H  +CI Q
Sbjct: 279 IPMNATCNGIKECPLGDDESKHCSECARKRCDHTCMNTPHGARCICQ 325


>AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor
           mediated endocytosis protein2 protein.
          Length = 925

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 97  IPKNKTKMGLCKCPKRRVTNQFCFEHXVNVCEN-CMVTNH-PKCIIQ 231
           IP N T  G+ +CP     ++ C E     C++ CM T H  +CI Q
Sbjct: 279 IPMNATCNGIKECPLGDDESKHCSECARKRCDHTCMNTPHGARCICQ 325


>AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical
           protein C39F7.2 protein.
          Length = 765

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 124 LCKCPKRRVTNQFCFEHXVNVCENCMVTNHP 216
           LC+  + R+ N FC +  +  C  C    HP
Sbjct: 210 LCEGSENRMANVFCEQCDIYYCTPCQTALHP 240


>AC103567-8|AAL35729.1|  305|Caenorhabditis elegans Hypothetical
           protein Y51F10.2 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 195 LYGYKSSKVYNSVISSMAAXSDYNPICEICTKPLNEGECIXTYLLPCXSLVLRR 356
           +Y +KSS    + IS+        P C IC +P +EG+ +   +L C   V  R
Sbjct: 1   MYSFKSSTDVKTYIST--------PSCRICLEPFDEGQHLPK-ILQCAHTVCER 45


>U64605-3|AAF98605.3|  423|Caenorhabditis elegans Hypothetical
           protein C05D9.3 protein.
          Length = 423

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 109 KTKMGLCKCPKRRVTNQFC 165
           K K G C+C K  VT +FC
Sbjct: 285 KCKCGQCQCNKPTVTGKFC 303


>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
            protein BE0003N10.3 protein.
          Length = 1145

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 180  ECLRKLYGYKSSKVYNSVISSMAAXSDYNPICEICTKPLNEGECIXTYLLPCXSLVL 350
            +CL  + G     ++N         SD N IC+ C +  +EG  +    L C S+++
Sbjct: 1065 QCLFSVSGKDFYPMHNFYRCITCNSSDRNAICQSCIERCHEGHTV--MFLKCDSVLI 1119


>AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2b protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 187 CENCMVTNHPKCIIQSYLQWLXEVTTIPYVR 279
           C  CM  N+ +CI   Y  WL    T P++R
Sbjct: 306 CVKCMQMNYGRCI---YNIWLITSETAPFLR 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,061,008
Number of Sequences: 27780
Number of extensions: 185908
Number of successful extensions: 479
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)