Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0652.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   2.2  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   3.9  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   3.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.9  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = -1

Query: 210 ICNHTIFANIHSMFETKLICHSSLGTLTQAHFGFIFWYPAFTLKRNYLNSKH 55
           IC   I    H++    +I    L  + Q       W P   ++RN LN +H
Sbjct: 144 ICTSGIVGRTHTV--GYIIIGFLLAGIVQPFLIHWIWTPHGWMRRNVLNKQH 193


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 225 YTLWMICNHTIFAN 184
           Y+L ++C H IF N
Sbjct: 11  YSLALLCLHAIFVN 24


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 225 YTLWMICNHTIFAN 184
           Y+L ++C H IF N
Sbjct: 11  YSLALLCLHAIFVN 24


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 7   YLLNLSFVD 33
           YLLN+SF+D
Sbjct: 374 YLLNVSFID 382


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 7   YLLNLSFVD 33
           YLLN+SF+D
Sbjct: 464 YLLNVSFID 472


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,931
Number of Sequences: 438
Number of extensions: 2237
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)