Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0652.Seq
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g14835.2 68415.m01682 zinc finger (C3HC4-type RING finger) fa... 46 9e-06
At2g14835.1 68415.m01681 zinc finger (C3HC4-type RING finger) fa... 46 9e-06
At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containi... 30 0.65
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 2.0
At1g34500.1 68414.m04288 membrane bound O-acyl transferase (MBOA... 28 2.6
At3g46810.1 68416.m05081 DC1 domain-containing protein contains ... 27 6.1
At5g46650.1 68418.m05748 zinc finger (C3HC4-type RING finger) fa... 26 8.0
At5g07630.1 68418.m00874 nuclear division RFT family protein low... 26 8.0
At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger) fa... 26 8.0
>At2g14835.2 68415.m01682 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 46.0 bits (104), Expect = 9e-06
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Frame = +1
Query: 118 MGLCKCPKRRVTNQFCFEHXVNVCENCMV-TNHPKCIIQSYLQWL----XEVTTIPYVRF 282
M +CKC K T +CF H VC C+ H C++++Y +W+ + +
Sbjct: 1 MVVCKCKK--ATRLYCFVHKAPVCGECICFPEHQTCVVRTYSEWVIDGEYDQPKCCQCQA 58
Query: 283 VQNH*MKENAYXLTCYHVFHWSCAESKXRALPRTTLP 393
+ L C H H SC S ++ P T P
Sbjct: 59 TFDEGAGHQVTRLGCLHAIHTSCLVSLIKSFPPHTAP 95
>At2g14835.1 68415.m01681 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 46.0 bits (104), Expect = 9e-06
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Frame = +1
Query: 118 MGLCKCPKRRVTNQFCFEHXVNVCENCMV-TNHPKCIIQSYLQWL----XEVTTIPYVRF 282
M +CKC K T +CF H VC C+ H C++++Y +W+ + +
Sbjct: 1 MVVCKCKK--ATRLYCFVHKAPVCGECICFPEHQTCVVRTYSEWVIDGEYDQPKCCQCQA 58
Query: 283 VQNH*MKENAYXLTCYHVFHWSCAESKXRALPRTTLP 393
+ L C H H SC S ++ P T P
Sbjct: 59 TFDEGAGHQVTRLGCLHAIHTSCLVSLIKSFPPHTAP 95
>At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 642
Score = 29.9 bits (64), Expect = 0.65
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 210 SSKVYNSVISSMAAXSDYNPICEICTKPLNEGEC 311
+S YNSVI + + + E+ T+ NEG+C
Sbjct: 196 TSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDC 229
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 88 KCRIPKNKTKMGLCKCPKRRVTNQFCFEHXVNVCENCMVTNHPKCII 228
K + K K G K KR TN+ E + C +C T H +C++
Sbjct: 522 KIEVVKEKANSG-DKKKKRLPTNRDKKERKIYKCNDCCTTLHAECLL 567
>At1g34500.1 68414.m04288 membrane bound O-acyl transferase (MBOAT)
family protein / wax synthase-related similar to wax
synthase [Simmondsia chinensis] GI:5020219; contains
Pfam profile PF03062: MBOAT family
Length = 341
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 222 YNSVISSMAAXSDYNPICEICTKPLNEG 305
+N ++SS+ YNP+ C +P+N G
Sbjct: 199 WNLMVSSVLRSGIYNPVRCACQRPMNSG 226
>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 686
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 319 LTCYHVFHWSCAESK 363
L C+ VFH CAESK
Sbjct: 42 LACFAVFHKECAESK 56
>At5g46650.1 68418.m05748 zinc finger (C3HC4-type RING finger)
family protein contains similarity to RING-H2 zinc
finger protein ATL6 [Arabidopsis thaliana] GI:4928403;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 289
Score = 26.2 bits (55), Expect = 8.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1
Query: 322 TCYHVFHWSCAE 357
TCYHVFH C +
Sbjct: 133 TCYHVFHQECID 144
>At5g07630.1 68418.m00874 nuclear division RFT family protein low
similarity to SP|P38206 Nuclear division RFT1 protein
{Saccharomyces cerevisiae}; contains Pfam profile
PF04506: Rft protein
Length = 401
Score = 26.2 bits (55), Expect = 8.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 118 FWFYFLVSGIYFKTKLF 68
+W YFL+ G+Y + LF
Sbjct: 132 YWAYFLICGVYRSSNLF 148
>At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 289
Score = 26.2 bits (55), Expect = 8.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1
Query: 322 TCYHVFHWSCAE 357
TCYHVFH C +
Sbjct: 128 TCYHVFHQECID 139
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,337,962
Number of Sequences: 28952
Number of extensions: 161566
Number of successful extensions: 536
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -