Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0650.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0558 - 22139878-22139895,22141073-22142404,22143355-221438...    24   4.9  
03_02_0814 + 11467775-11468308                                         28   5.6  
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    27   7.5  

>06_03_0558 -
           22139878-22139895,22141073-22142404,22143355-22143804,
           22144247-22144315
          Length = 622

 Score = 23.8 bits (49), Expect(2) = 4.9
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 490 HHHHHC 507
           HHHHHC
Sbjct: 353 HHHHHC 358



 Score = 22.6 bits (46), Expect(2) = 4.9
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 487 DHHHHH 504
           DHHHHH
Sbjct: 351 DHHHHH 356


>03_02_0814 + 11467775-11468308
          Length = 177

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 478 HNLDHHHHH 504
           H+LDHHHHH
Sbjct: 79  HDLDHHHHH 87


>02_05_1349 +
           35841694-35843738,35844506-35844624,35844932-35845075,
           35845189-35845310,35845474-35845609,35845861-35845957,
           35846727-35846899,35847099-35847262,35847466-35847537,
           35847833-35847928,35847999-35848124
          Length = 1097

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 372 SWGKIDIXSIKSKLELLPGLGSVKAKLVF 458
           S GK+++ S+ S L L  G+G+++A  +F
Sbjct: 768 SSGKLELSSVSSALVLAAGIGTIEALALF 796


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,438,970
Number of Sequences: 37544
Number of extensions: 153787
Number of successful extensions: 455
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)