Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0650.Seq
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 0.48
SB_46676| Best HMM Match : UPF0259 (HMM E-Value=5.2) 29 3.3
SB_50830| Best HMM Match : RVT_1 (HMM E-Value=0.04) 28 4.4
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7) 27 7.6
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 26.2 bits (55), Expect(2) = 0.48
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +1
Query: 475 YHNLDHHHHHCFITRVAII 531
+H HHHHH I + +I
Sbjct: 286 HHQQHHHHHHHHIINIIVI 304
Score = 24.2 bits (50), Expect(2) = 1.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 490 HHHHHCFITRVAIIXMS 540
HHHHH I + II ++
Sbjct: 292 HHHHHHIINIIVIIIVN 308
Score = 23.8 bits (49), Expect(2) = 0.48
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 472 RYHNLDHHHH 501
RYH+ HHHH
Sbjct: 256 RYHHHHHHHH 265
Score = 23.8 bits (49), Expect(2) = 1.8
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +1
Query: 475 YHNLDHHHHH 504
+H+ HHHHH
Sbjct: 285 HHHQQHHHHH 294
>SB_46676| Best HMM Match : UPF0259 (HMM E-Value=5.2)
Length = 597
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/71 (22%), Positives = 35/71 (49%)
Frame = +2
Query: 125 LMSQINHHHFILFHFTPCYNNRQTS*AFVDVVGVSLRMVHSRANHYLLCVIMLLNY*NQH 304
L+S I I+FH+ C+ +TS +GV ++++ H+ + ++++ +
Sbjct: 179 LVSSIRKDVIIMFHYYWCHQYEKTSSLCYTTIGV----INTKRRHHYVSLLLVSSIRKDV 234
Query: 305 MYLFIYLLEHQ 337
+ +F Y HQ
Sbjct: 235 IIMFHYYWCHQ 245
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/71 (22%), Positives = 35/71 (49%)
Frame = +2
Query: 125 LMSQINHHHFILFHFTPCYNNRQTS*AFVDVVGVSLRMVHSRANHYLLCVIMLLNY*NQH 304
L+S I I+FH+ C+ +TS +GV ++++ H+ + ++++ +
Sbjct: 446 LVSSIRKDVIIMFHYYWCHQYEKTSSLCFTTIGV----INTKRRHHYVSLLLVSSIRKDV 501
Query: 305 MYLFIYLLEHQ 337
+ +F Y HQ
Sbjct: 502 IIMFHYYWCHQ 512
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/71 (22%), Positives = 35/71 (49%)
Frame = +2
Query: 125 LMSQINHHHFILFHFTPCYNNRQTS*AFVDVVGVSLRMVHSRANHYLLCVIMLLNY*NQH 304
L+S I I+FH+ C+ +TS +GV ++++ H+ + ++++ +
Sbjct: 493 LVSSIRKDVIIMFHYYWCHQYEKTSSLCFTTIGV----INTKRRHHYVSLLLVSSIRKDV 548
Query: 305 MYLFIYLLEHQ 337
+ +F Y HQ
Sbjct: 549 IIMFHYYWCHQ 559
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +2
Query: 125 LMSQINHHHFILFHFTPCYNNRQTS*AFVDVVGVSLRMVHSRANHYLLCVIMLLNY*NQH 304
LMS I I+FH+ C+ +TS +GV ++++ H+ + ++++ +
Sbjct: 351 LMSSIRKDVIIMFHYYWCHQYEKTSSLCYTTIGV----INTKRRHHYVSLLLVSSIRKDV 406
Query: 305 MYLFIYLLEHQ 337
+ + Y HQ
Sbjct: 407 IIMLHYYWCHQ 417
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +2
Query: 125 LMSQINHHHFILFHFTPCYNNRQTS*AFVDVVGVSLRMVHSRANHYLLCVIMLLNY*NQH 304
L+S I I+FH+ C+ +TS +GV +++ H+ + ++++ +
Sbjct: 304 LVSSIRQDVIIMFHYYWCHQYDKTSSLCFTTIGV----INTTRRHHYVSLLLMSSIRKDV 359
Query: 305 MYLFIYLLEHQ 337
+ +F Y HQ
Sbjct: 360 IIMFHYYWCHQ 370
>SB_50830| Best HMM Match : RVT_1 (HMM E-Value=0.04)
Length = 273
Score = 28.3 bits (60), Expect = 4.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 469 FRYHNLDHHHHHCFIT 516
FR H HHHHH +T
Sbjct: 26 FRLHTKPHHHHHMSVT 41
>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1
Query: 472 RYHNLDHHHHH 504
RYH L HHHHH
Sbjct: 112 RYHPLCHHHHH 122
>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 472 RYHNLDHHHHHCFITRVAII 531
RYH+ HHHH IT I+
Sbjct: 781 RYHHHPHHHHSAIITIYIIV 800
>SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)
Length = 325
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 220 GGKFAHGTLTCKPLFTLRHNAIKLLKSTYVFIYIFIRT 333
GG+FA G +T + F L+ + K+ + +++FI T
Sbjct: 82 GGEFAKGVITGRRRFKLKEHLPKIFYDGSIPLFVFIFT 119
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,236,180
Number of Sequences: 59808
Number of extensions: 188846
Number of successful extensions: 610
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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