Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0650.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    26   2.4  
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr...    26   2.5  
Z78543-3|CAB01755.2|  772|Caenorhabditis elegans Hypothetical pr...    26   2.6  

>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
           protein F29G6.3b protein.
          Length = 1785

 Score = 25.8 bits (54), Expect(2) = 2.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 475 YHNLDHHHHH 504
           +H+ DHHHHH
Sbjct: 360 HHDHDHHHHH 369



 Score = 21.4 bits (43), Expect(2) = 2.4
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 478 HNLDHHHHHCFIT 516
           H+  HHHH   +T
Sbjct: 363 HDHHHHHHESHVT 375


>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
           protein F29G6.3c protein.
          Length = 1453

 Score = 25.8 bits (54), Expect(2) = 2.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 475 YHNLDHHHHH 504
           +H+ DHHHHH
Sbjct: 360 HHDHDHHHHH 369



 Score = 21.4 bits (43), Expect(2) = 2.5
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 478 HNLDHHHHHCFIT 516
           H+  HHHH   +T
Sbjct: 363 HDHHHHHHESHVT 375


>Z78543-3|CAB01755.2|  772|Caenorhabditis elegans Hypothetical
           protein F29G6.3a protein.
          Length = 772

 Score = 25.8 bits (54), Expect(2) = 2.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 475 YHNLDHHHHH 504
           +H+ DHHHHH
Sbjct: 360 HHDHDHHHHH 369



 Score = 21.4 bits (43), Expect(2) = 2.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 478 HNLDHHHHHCFIT 516
           H+  HHHH   +T
Sbjct: 363 HDHHHHHHESHVT 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,302,847
Number of Sequences: 27780
Number of extensions: 149499
Number of successful extensions: 395
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)