Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0650.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02150.2 68416.m00185 TCP family transcription factor, putati...    31   0.51 
At3g02150.1 68416.m00184 TCP family transcription factor, putati...    31   0.51 
At5g46780.2 68418.m05763 VQ motif-containing protein contains PF...    28   4.7  
At5g46780.1 68418.m05762 VQ motif-containing protein contains PF...    28   4.7  
At3g05650.1 68416.m00629 disease resistance family protein conta...    28   4.7  
At1g79580.3 68414.m09279 no apical meristem (NAM) family protein...    28   4.7  
At1g79580.2 68414.m09278 no apical meristem (NAM) family protein...    28   4.7  
At1g79580.1 68414.m09277 no apical meristem (NAM) family protein...    28   4.7  

>At3g02150.2 68416.m00185 TCP family transcription factor, putative
           similar to transcription factor PCF6 [Oryza sativa
           (japonica cultivar-group)] GI:20975255; contains Pfam
           profile PF03634: TCP family transcription factor
          Length = 355

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 475 YHNLDHHHHH 504
           YHNL+HHHHH
Sbjct: 207 YHNLEHHHHH 216


>At3g02150.1 68416.m00184 TCP family transcription factor, putative
           similar to transcription factor PCF6 [Oryza sativa
           (japonica cultivar-group)] GI:20975255; contains Pfam
           profile PF03634: TCP family transcription factor
          Length = 278

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 475 YHNLDHHHHH 504
           YHNL+HHHHH
Sbjct: 207 YHNLEHHHHH 216


>At5g46780.2 68418.m05763 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 237

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 478 HNLDHHHHHCFITRV 522
           HN DHHHHH  + ++
Sbjct: 12  HNNDHHHHHLGVNKM 26


>At5g46780.1 68418.m05762 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 237

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 478 HNLDHHHHHCFITRV 522
           HN DHHHHH  + ++
Sbjct: 12  HNNDHHHHHLGVNKM 26


>At3g05650.1 68416.m00629 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-4A protein
           [Lycopersicon esculentum] gi|3097197|emb|CAA73187
          Length = 868

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 4   SGSSKKSTEKISVKDHHFTKII 69
           SG+   +T KISV DHH T++I
Sbjct: 371 SGNHVSATTKISVADHHPTQLI 392


>At1g79580.3 68414.m09279 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 478 HNLDHHHHHCFITR 519
           H LDHHHHH  I R
Sbjct: 213 HPLDHHHHHHHIGR 226


>At1g79580.2 68414.m09278 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 478 HNLDHHHHHCFITR 519
           H LDHHHHH  I R
Sbjct: 213 HPLDHHHHHHHIGR 226


>At1g79580.1 68414.m09277 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 478 HNLDHHHHHCFITR 519
           H LDHHHHH  I R
Sbjct: 213 HPLDHHHHHHHIGR 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,637,757
Number of Sequences: 28952
Number of extensions: 132486
Number of successful extensions: 448
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)