Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0649.Seq
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0019 + 403078-404211                                             28   4.8  
03_01_0545 - 4086692-4087591                                           28   4.8  
12_01_0861 + 8153108-8153266,8154633-8155136                           27   8.4  
06_03_0217 - 18158217-18158705                                         27   8.4  
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    27   8.4  

>09_01_0019 + 403078-404211
          Length = 377

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 368 GESGFDSGEGA*ETATTSKEGSRRANYPLPXRGGSD 475
           G S  DSG GA ++A   K  SRR  +      GSD
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSD 356


>03_01_0545 - 4086692-4087591
          Length = 299

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 507 PRKSPVSVIFWSLPPRXGSG*FARLLPSL--DVVAVSQAP-SPESNP 376
           PR    +V  W LPPR G G F   +  L  ++   ++AP SPE +P
Sbjct: 196 PRTPAAAVARWDLPPR-GRGVFVLSISPLRREISVSTEAPSSPEPSP 241


>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -1

Query: 504 RKSPVSVIFWSLPPRXGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVVAE 337
           R +P S++  S  P    G   RL  S  +VA+ + P P S+P  D P   TT+ + E
Sbjct: 91  RAAPRSLLS-SPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147


>06_03_0217 - 18158217-18158705
          Length = 162

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 498 SPVSVIFWSLPPRXGSG*FARLLPSLDVVAVSQAPSPES 382
           SPVS +F SL P   SG   +  P+L +   S  P P S
Sbjct: 11  SPVSPVFPSLSPSDSSGFIPQTSPALSMDPRSPRPFPLS 49


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 429 PSLDVVAVSQAPSPESNPDSPLP 361
           P LD   ++Q PSP +NP  P P
Sbjct: 55  PPLDEETLAQFPSPPTNPSPPPP 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,649,104
Number of Sequences: 37544
Number of extensions: 332796
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)