Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0649.Seq
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ...    30   1.3  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   3.0  
At3g05660.1 68416.m00630 disease resistance family protein conta...    29   3.0  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   3.0  
At4g38560.1 68417.m05459 expressed protein                             28   5.3  
At2g07020.1 68415.m00803 protein kinase family protein contains ...    28   5.3  
At4g20340.1 68417.m02969 transcription initiation factor IIE (TF...    27   9.3  
At1g14270.1 68414.m01692 CAAX amino terminal protease family pro...    27   9.3  

>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
           SP|P18708 Vesicular-fusion protein NSF
           (N-ethylmaleimide-sensitive fusion protein)
           (NEM-sensitive fusion protein) {Cricetulus griseus};
           contains Pfam profiles PF00004: ATPase AAA family,
           PF02359: Cell division protein 48 (CDC48) N-terminal
           domain; contains non-consensus AT-AC splice sites at
           intron 2
          Length = 742

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +3

Query: 201 DQNQSTEGLASE--VVNFDELDNFCRSHG 281
           +Q+Q T G ASE  V+ FDE+D  C+S G
Sbjct: 307 EQDQRTLGDASELHVIIFDEIDAICKSRG 335


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 438 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 337
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At3g05660.1 68416.m00630 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 883

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 189 VLLLDQNQSTEGLASEVVNFDELDNFCRSHGQVPATHLSNV 311
           +L LD N+ +  L  EV+N  +L     SH Q   T   N+
Sbjct: 211 ILRLDNNKLSGNLPLEVINLTKLSEISLSHNQFTGTLPPNI 251


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 429 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 322
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 8   SYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILEL 151
           SY + + +   + +     GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 341 SYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 226 RPSVDWF*SNKSTHPITGQSSD 161
           RPS+DWF  N+S +  +  SS+
Sbjct: 233 RPSMDWFEDNRSNYATSSSSSE 254


>At4g20340.1 68417.m02969 transcription initiation factor IIE
           (TFIIE) alpha subunit family protein / general
           transcription factor TFIIE family protein contains Pfam
           profile: PF02002 TFIIE alpha subunit
          Length = 527

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 530 VVLXPITSLVRVPYRLFFGHYLP 462
           VVL P   LVR+  R+F+ +Y P
Sbjct: 12  VVLEPFVKLVRLLVRIFYDNYTP 34


>At1g14270.1 68414.m01692 CAAX amino terminal protease family
           protein contains Pfam profile PF02517: CAAX amino
           terminal protease family
          Length = 353

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 6   VVICLSQRLSHACLSASRIKAIPRMAQY 89
           ++ CLSQ  S  CLS SR   +P+   Y
Sbjct: 18  IISCLSQSSSLLCLSDSRRLILPKTCTY 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,368,518
Number of Sequences: 28952
Number of extensions: 253481
Number of successful extensions: 563
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)