Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0648.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   2.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   2.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   6.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.1  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 473 LTPSVCYVETWPAKYDVKVQSINSN*GIVLD 381
           LT +VC+V    A +  K  SIN N  + LD
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCSINENLKMGLD 220


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 473 LTPSVCYVETWPAKYDVKVQSINSN*GIVLD 381
           LT +VC+V    A +  K  SIN N  + LD
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCSINENLKMGLD 220


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 185  ENTGCCPVSCSNTLAARVSLSPDSP 111
            ENT C P + S    +   + PD P
Sbjct: 2280 ENTECHPDASSTMAPSTTPMVPDKP 2304



 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +3

Query: 243  PLYSRGAKAEEILERGLKVREY 308
            PLY +     +  +RGL  + Y
Sbjct: 2564 PLYGQSFSLADAADRGLNAKSY 2585


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 348 QNYPWRRSCHAA 313
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 348 QNYPWRRSCHAA 313
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 348 QNYPWRRSCHAA 313
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 292 KPLSRISSALAPRLYNGQQSFHY 224
           KPL    +    R Y+ QQS HY
Sbjct: 778 KPLVDAQTMNLLRSYHQQQSHHY 800


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,698
Number of Sequences: 336
Number of extensions: 2678
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)