Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0648.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 126 1e-29
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 126 1e-29
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 106 1e-23
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 105 1e-23
02_02_0196 + 7685933-7685961,7686086-7686284 56 2e-08
01_01_0582 - 4317216-4317731 28 3.6
01_06_0368 + 28792168-28792372,28792654-28792853,28793218-287936... 28 4.8
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 27 6.3
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 27 8.4
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 126 bits (303), Expect = 1e-29
Identities = 60/89 (67%), Positives = 67/89 (75%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPH 497
G+DFYVVL R G+ VA RRR +VG H
Sbjct: 126 GMDFYVVLERAGYRVARRRRCKSRVGIQH 154
Score = 106 bits (254), Expect = 1e-23
Identities = 53/74 (71%), Positives = 60/74 (81%)
Frame = +1
Query: 61 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 240
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 241 VHCTVEELKQKKSL 282
+ TV K + L
Sbjct: 69 CYVTVRGEKAMQLL 82
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 126 bits (303), Expect = 1e-29
Identities = 60/89 (67%), Positives = 67/89 (75%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPH 497
G+DFYVVL R G+ VA RRR +VG H
Sbjct: 126 GMDFYVVLERAGYRVARRRRCKSRVGIQH 154
Score = 106 bits (254), Expect = 1e-23
Identities = 53/74 (71%), Positives = 60/74 (81%)
Frame = +1
Query: 61 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 240
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 241 VHCTVEELKQKKSL 282
+ TV K + L
Sbjct: 69 CYVTVRGEKAMQLL 82
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 106 bits (254), Expect = 1e-23
Identities = 53/74 (71%), Positives = 60/74 (81%)
Frame = +1
Query: 61 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 240
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 241 VHCTVEELKQKKSL 282
+ TV K + L
Sbjct: 69 CYVTVRGEKAMQLL 82
Score = 62.5 bits (145), Expect = 2e-10
Identities = 39/91 (42%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNF--SATGNFGFGIQEHIDLGIKYDPSIG 404
K C + RG KA ++LE GLK+ DN S T + + +YDPS G
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKRINLSNQCFRYDPSTG 122
Query: 405 IYGLDFYVVLGRPGFNVAHRRRKTGKVGFPH 497
IYG+DFYVVL R G+ VA RRR +VG H
Sbjct: 123 IYGMDFYVVLERAGYRVARRRRCKSRVGIQH 153
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 105 bits (253), Expect = 1e-23
Identities = 53/74 (71%), Positives = 60/74 (81%)
Frame = +1
Query: 61 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 240
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 35 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 94
Query: 241 VHCTVEELKQKKSL 282
+ TV K + L
Sbjct: 95 CYVTVRGEKAMQLL 108
Score = 74.1 bits (174), Expect = 6e-14
Identities = 36/52 (69%), Positives = 40/52 (76%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 386
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 92 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 55.6 bits (128), Expect = 2e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +3
Query: 387 YDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPH 497
YDPS GIYG+DFYVVL R G+ VA RRR +VG H
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQH 47
>01_01_0582 - 4317216-4317731
Length = 171
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -3
Query: 224 RRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSPTQMF 99
RRI ++ + L TGC P S S AARV S Q F
Sbjct: 98 RRILRENKKRILLCATGCVPASSSAAAAARVPYDAYSYAQNF 139
>01_06_0368 +
28792168-28792372,28792654-28792853,28793218-28793675,
28793796-28793847
Length = 304
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 352 KPKLPVAEKLSRRNSYSLTFKPLSRISSALAPRLYNGQQS 233
K ++ V +KLS + S +++ K I AL P + NG++S
Sbjct: 120 KQRIEVLDKLSMKISEAISVKQNMLIEHALHPGMSNGKES 159
>12_02_0973 +
24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 304 SLTFKPLSRISSALAPRLYNGQQSFHYD 221
S+TF PLS P+L NG +++H D
Sbjct: 349 SVTFLPLSDHHFTGTPKLNNGNKAYHID 376
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEI-LERGLKVREYE-LRRDNFSATGNFGFGIQEHIDLGIK 386
K+ PL G KA +I L V ++ R+ +GN+ + I +H+D+ I+
Sbjct: 1601 KEWVPLRQEGEKAPQIRLAHPATVSRFKGTRKRRRDTSGNYSWAIGDHVDVLIE 1654
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,700,193
Number of Sequences: 37544
Number of extensions: 287190
Number of successful extensions: 768
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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