Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0648.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal prote... 134 4e-32
U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal prote... 131 2e-31
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 29 1.4
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 29 2.5
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 29 2.5
AF024495-1|AAB70338.3| 399|Caenorhabditis elegans Nuclear hormo... 27 5.7
Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical pr... 27 7.6
U80027-17|AAC48114.1| 90|Caenorhabditis elegans Hypothetical p... 27 7.6
U14521-1|AAA64269.1| 360|Caenorhabditis elegans ppp-1 protein. 27 7.6
AC006608-3|AAF39757.1| 404|Caenorhabditis elegans Pyrophosphory... 27 7.6
U88176-4|ABB51191.1| 427|Caenorhabditis elegans Hypothetical pr... 27 10.0
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 27 10.0
>U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.2 protein.
Length = 196
Score = 134 bits (323), Expect = 4e-32
Identities = 61/81 (75%), Positives = 69/81 (85%)
Frame = +3
Query: 255 RGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVL 434
RG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG+DFYVVL
Sbjct: 82 RGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFYVVL 141
Query: 435 GRPGFNVAHRRRKTGKVGFPH 497
R G +A RRR G+VG H
Sbjct: 142 DRAGRRIAKRRRAPGRVGPSH 162
Score = 129 bits (312), Expect = 1e-30
Identities = 62/76 (81%), Positives = 68/76 (89%)
Frame = +1
Query: 55 SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 234
++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEK
Sbjct: 15 ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74
Query: 235 IAVHCTVEELKQKKSL 282
IAVHCTV K ++ L
Sbjct: 75 IAVHCTVRGPKAEEIL 90
>U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.1 protein.
Length = 196
Score = 131 bits (317), Expect = 2e-31
Identities = 59/81 (72%), Positives = 68/81 (83%)
Frame = +3
Query: 255 RGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVL 434
RG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+DFYVVL
Sbjct: 82 RGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVL 141
Query: 435 GRPGFNVAHRRRKTGKVGFPH 497
R G V+ RRR G++G H
Sbjct: 142 NRNGVRVSKRRRAPGRIGPSH 162
Score = 129 bits (311), Expect = 1e-30
Identities = 62/75 (82%), Positives = 67/75 (89%)
Frame = +1
Query: 58 KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 237
+NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKI
Sbjct: 16 RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75
Query: 238 AVHCTVEELKQKKSL 282
AVHCTV K ++ L
Sbjct: 76 AVHCTVRGPKAEEIL 90
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 255 RGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 407
R AEE+ RG + Y E+RR TG FG G + + I + S+ +
Sbjct: 355 REQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 166 GQQPVFSKARYTVRSFGIRRNEKIAVHCTVEELKQKKSLRGV*KSENMNCGVTTSPP-RV 342
G P F A+ V+ F ++ ++ V E Q S+ + +S+ +N G+T PP V
Sbjct: 856 GAVPTFD-AKKIVQLFETKKEKEAPVKKVAETKTQTLSVLPLKRSQAINIGLTKLPPINV 914
Query: 343 ILASVFK 363
I A++ K
Sbjct: 915 IPAAIMK 921
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin protein.
Length = 1346
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 166 GQQPVFSKARYTVRSFGIRRNEKIAVHCTVEELKQKKSLRGV*KSENMNCGVTTSPP-RV 342
G P F A+ V+ F ++ ++ V E Q S+ + +S+ +N G+T PP V
Sbjct: 856 GAVPTFD-AKKIVQLFETKKEKEAPVKKVAETKTQTLSVLPLKRSQAINIGLTKLPPINV 914
Query: 343 ILASVFK 363
I A++ K
Sbjct: 915 IPAAIMK 921
>AF024495-1|AAB70338.3| 399|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 125 protein.
Length = 399
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 237 CCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNF 347
C + + + ++ E G+ +++ RD+F ATG F
Sbjct: 55 CSRNFCKRCRLKKCREMGMDTTKFQYNRDSFRATGQF 91
>Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical
protein C09F9.3 protein.
Length = 800
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -2
Query: 252 CTMDSNLFITTDTKRPHCIPSLGK---YRLLSCELLQHL 145
CT+D F D+K+ C+ S+ K Y +++ E+ H+
Sbjct: 207 CTIDGQRFSLGDSKKNFCLQSVSKAFNYAIVASEIGSHV 245
>U80027-17|AAC48114.1| 90|Caenorhabditis elegans Hypothetical
protein T28A11.4 protein.
Length = 90
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 244 GQQSFHYDGYQKTALYT*PWKIQAVVL*VAPTPWRHESACHRIHQ 110
G+Q+FH++G +K A WK V P+ ++ S+ +IHQ
Sbjct: 51 GEQTFHFNGPEKGAFLDSDWKE------VDPSNYQMGSSHQKIHQ 89
>U14521-1|AAA64269.1| 360|Caenorhabditis elegans ppp-1 protein.
Length = 360
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 359 NTEAKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSTV 249
N +KIT+ +V+ FI PL DFF ++ST+
Sbjct: 99 NHHSKITKDALIVSCDFISDASLIPLVDFFRATNSTL 135
>AC006608-3|AAF39757.1| 404|Caenorhabditis elegans
Pyrophosphorylase family protein 1 protein.
Length = 404
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 359 NTEAKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSTV 249
N +KIT+ +V+ FI PL DFF ++ST+
Sbjct: 99 NHHSKITKDALIVSCDFISDASLIPLVDFFRATNSTL 135
>U88176-4|ABB51191.1| 427|Caenorhabditis elegans Hypothetical
protein F18F11.3 protein.
Length = 427
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 390 DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGK 482
DP GI G+ + V G F +A R+ +GK
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGK 190
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 227 LRRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSPTQMFK 96
LRRI + +++ N CC SCS T +++L+ TQ+F+
Sbjct: 289 LRRIQATVSCGVSIGNQ-CCHQSCSGTYQRQINLNYYILTQIFR 331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,641,475
Number of Sequences: 27780
Number of extensions: 250279
Number of successful extensions: 662
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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