Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0648.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 128 2e-30
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 128 3e-30
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 128 3e-30
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 128 3e-30
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 128 3e-30
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 37 0.009
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 36 0.011
At4g30990.1 68417.m04398 expressed protein ; expression supporte... 29 1.3
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 29 1.7
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 29 1.7
At4g14280.1 68417.m02201 hypothetical protein 28 4.0
At5g48500.1 68418.m05997 expressed protein similar to unknown pr... 27 7.0
At5g48180.1 68418.m05952 kelch repeat-containing protein contain... 27 7.0
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 27 7.0
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 27 7.0
At2g31990.1 68415.m03908 exostosin family protein contains Pfam ... 27 9.3
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 128 bits (310), Expect = 2e-30
Identities = 61/89 (68%), Positives = 68/89 (76%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 56 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115
Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPH 497
G+DFYVVL RPG+ VA RRR +VG H
Sbjct: 116 GMDFYVVLERPGYRVARRRRCKARVGIQH 144
Score = 104 bits (250), Expect = 3e-23
Identities = 52/72 (72%), Positives = 60/72 (83%)
Frame = +1
Query: 67 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 246
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 247 CTVEELKQKKSL 282
TV K + L
Sbjct: 61 VTVRGEKAMQLL 72
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 128 bits (308), Expect = 3e-30
Identities = 61/89 (68%), Positives = 68/89 (76%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPH 497
G+DFYVVL RPG+ VA RRR +VG H
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQH 154
Score = 106 bits (254), Expect = 9e-24
Identities = 53/74 (71%), Positives = 61/74 (82%)
Frame = +1
Query: 61 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 240
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 241 VHCTVEELKQKKSL 282
+ TV K + L
Sbjct: 69 CYVTVRGEKAMQLL 82
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 128 bits (308), Expect = 3e-30
Identities = 61/89 (68%), Positives = 68/89 (76%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 56 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115
Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPH 497
G+DFYVVL RPG+ VA RRR +VG H
Sbjct: 116 GMDFYVVLERPGYRVARRRRCKTRVGIQH 144
Score = 104 bits (250), Expect = 3e-23
Identities = 52/72 (72%), Positives = 60/72 (83%)
Frame = +1
Query: 67 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 246
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 247 CTVEELKQKKSL 282
TV K + L
Sbjct: 61 VTVRGEKAMQLL 72
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 128 bits (308), Expect = 3e-30
Identities = 61/89 (68%), Positives = 68/89 (76%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPH 497
G+DFYVVL RPG+ VA RRR +VG H
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQH 154
Score = 106 bits (254), Expect = 9e-24
Identities = 53/74 (71%), Positives = 61/74 (82%)
Frame = +1
Query: 61 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 240
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 241 VHCTVEELKQKKSL 282
+ TV K + L
Sbjct: 69 CYVTVRGEKAMQLL 82
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 128 bits (308), Expect = 3e-30
Identities = 61/89 (68%), Positives = 68/89 (76%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPH 497
G+DFYVVL RPG+ VA RRR +VG H
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQH 154
Score = 106 bits (254), Expect = 9e-24
Identities = 53/74 (71%), Positives = 61/74 (82%)
Frame = +1
Query: 61 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 240
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 241 VHCTVEELKQKKSL 282
+ TV K + L
Sbjct: 69 CYVTVRGEKAMQLL 82
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 36.7 bits (81), Expect = 0.009
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +3
Query: 273 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 437
E+LE+GLK EY + S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
contains Pfam profiles PF00673: ribosomal L5P family
C-terminus, PF00281: ribosomal protein L5
Length = 262
Score = 36.3 bits (80), Expect = 0.011
Identities = 17/68 (25%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Frame = +1
Query: 61 NVMRNLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 231
N+ + ++K+ +N +G++ L A K + +TGQ+P+ ++AR ++ +F IR ++
Sbjct: 79 NIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQ 138
Query: 232 KIAVHCTV 255
+ + T+
Sbjct: 139 PLGIAVTL 146
>At4g30990.1 68417.m04398 expressed protein ; expression supported
by MPSS
Length = 2138
Score = 29.5 bits (63), Expect = 1.3
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = -2
Query: 246 MDSNLFIT-TDTKRPHCIPSLGKYRLLSCELLQHLGGTS----QPVTGFTNTDVQAKLSD 82
+DS+L I T R H S GKY+L+ L L GT+ +TG ++D++ LS
Sbjct: 465 VDSSLLICFKKTLRQHLAVSDGKYQLMIHSFLHSLLGTTLRSCYKMTGINHSDLEEALSF 524
Query: 81 MK 76
K
Sbjct: 525 AK 526
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 29.1 bits (62), Expect = 1.7
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 249 YSRGAKAEEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFY 425
Y++ E+ +E L+ RE L+ D F+ G GF G + +DLG + + GL
Sbjct: 123 YTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQ 182
Query: 426 VVL 434
V L
Sbjct: 183 VFL 185
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +1
Query: 187 KARYTVRSFGIRRNEKIAVHCTVEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVF-- 360
+A +TV GI + ++ ++ L+ K + ++ G+ + R+ +F
Sbjct: 140 QATWTVSGVGIS-SFRVLQSSSISLLRNLKRISDGIFKPILDNGLREATTRIGRQEIFDR 198
Query: 361 KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 447
+ TLTW +S +P L + W + S ++
Sbjct: 199 RTTLTWKNSEVPLLPYARWLYISSYVSRI 227
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 367 TLTWVSSTIPQLEFMDWTFTS 429
T TW SS +P L + W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187
>At5g48500.1 68418.m05997 expressed protein similar to unknown
protein (gb|AAD28645.1)
Length = 167
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 269 CFSSSTVQWTAIFSLRRIPKDRTVYLA 189
CF ++T Q A P+DR +YLA
Sbjct: 33 CFETATTQQPAFLHYASYPQDRDLYLA 59
>At5g48180.1 68418.m05952 kelch repeat-containing protein contains
Pfam PF01344: Kelch motif (5 repeats) ;similar to Tip
elongation aberrant protein 1 (Cell polarity protein
tea1) (SP:P87061) [Schizosaccharomyces pombe]
Length = 326
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 284 LKDFFCFSSSTVQWTAIFSLRRIPKDRTVYLAL 186
L D CF ++ QW A+ + +P R+V+ A+
Sbjct: 196 LGDIHCFDLASEQWKAVETTGDVPAARSVFPAV 228
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 60 KCNAESSYQKALLEHLCW 113
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 60 KCNAESSYQKALLEHLCW 113
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At2g31990.1 68415.m03908 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 479
Score = 26.6 bits (56), Expect = 9.3
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 106 CVGESGDRLTRAAKVLEQLTGQQPVF--SKARYTVRSFGIRRN-EKIAVHCTVEELK 267
C+ GD LTR + L G PVF + Y + I +N K +V+ TV+EL+
Sbjct: 349 CLQPPGDSLTRKSVFDSILAGCIPVFFNQGSAYKQYLWHIPKNSSKYSVYITVKELR 405
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,068,977
Number of Sequences: 28952
Number of extensions: 234935
Number of successful extensions: 635
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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