Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0646.Seq
         (538 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            26   0.24 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    26   0.24 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   0.74 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   0.74 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   0.74 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   3.9  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   9.1  

>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 517 HFDSANSVKXRQRSNWPEHYVGGSVFIASVTGSGH 413
           H D  + V  + RSN PE   GG  ++A+ +G+ H
Sbjct: 13  HLDDDDFVVVKTRSNSPE-AGGGGFWLAAASGAPH 46


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 517 HFDSANSVKXRQRSNWPEHYVGGSVFIASVTGSGH 413
           H D  + V  + RSN PE   GG  ++A+ +G+ H
Sbjct: 13  HLDDDDFVVVKTRSNSPE-AGGGGFWLAAASGAPH 46


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 218 ESG*KQIYIWSRSVSYSGRS 277
           E+G +QIY W R V  +G S
Sbjct: 204 ETGDRQIYPWMRKVHVAGAS 223


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 218 ESG*KQIYIWSRSVSYSGRS 277
           E+G +QIY W R V  +G S
Sbjct: 204 ETGDRQIYPWMRKVHVAGAS 223


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 218 ESG*KQIYIWSRSVSYSGRS 277
           E+G +QIY W R V  +G S
Sbjct: 204 ETGDRQIYPWMRKVHVAGAS 223


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -2

Query: 45  KCSTERNACWRSLDR 1
           KC   +  CWR  D+
Sbjct: 877 KCENGKPTCWRECDK 891


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 27  FVLCCTLIALAALSV 71
           F +CC  IAL  +++
Sbjct: 78  FAICCDFIALIVVNI 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,414
Number of Sequences: 336
Number of extensions: 2204
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)