Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0646.Seq
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    31   0.11 
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    29   0.33 
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    29   0.33 
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    27   2.3  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    26   3.1  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   7.2  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    25   7.2  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    25   9.5  

>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 191 SAPGQVRRAESG*KQIYIWSRSVSYSGRSQNYKD---SKQAYAD 313
           S  GQVRR     +++Y W+R++ Y    +N +D   SKQ  AD
Sbjct: 604 STIGQVRRQLQQGRRLYQWARNIHYLIYEENMRDGLVSKQCLAD 647


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 132 NAASSESSYLNKDNDSISAGA-HRAKSVEQSQDKSKYTSGPEACRTAEG 275
           +++SSES   ++DNDS S+ +   ++S  +  D S  +S  E+  ++EG
Sbjct: 113 DSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEG 161



 Score = 29.5 bits (63), Expect = 0.33
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 132 NAASSESSYLNKDNDSISAGA-HRAKSVEQSQDKSKYTSGPEACRTAEG 275
           +++SSES   ++DNDS S+ +   ++S  +  D S  +S  E+  ++EG
Sbjct: 167 SSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEG 215



 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 132 NAASSESSYLNKDNDSISAGA-HRAKSVEQSQDKSKYTSGPEA 257
           +++SSES   ++DNDS S+ +   ++S  +  D S  +S  E+
Sbjct: 221 SSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSES 263


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 3   DPKTANMRFVLCCTLIALAALSVKAFGHHPGNRDTVEVKNRKYNAASSESSYLNKDN 173
           DP       VLC  LIA      KA+   P +RD  +  NR YN  +   ++  +D+
Sbjct: 358 DPNAIQRAKVLCEDLIASVHQQYKAWKSQPKDRDQNQ-GNRAYNPPNRNQAFSARDS 413


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 135 AASSESSYLNKDNDSISAGAHRAK 206
           A  SE  YL++++D ++ GAHR +
Sbjct: 700 AQYSELPYLDRNHDRVAVGAHRRR 723


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 332 GGSASAGQSRDSSLRERNVHYVSDGEAVAASSD 430
           GG+A  G S+   + E N+H   D  A+ A+++
Sbjct: 415 GGAAGGGYSQFIPMEEFNLHLTGDIHAITAATN 447


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 326 PNGGSASAGQSRDSSLRERNVHYVSDGEAVAASSD 430
           P+  ++ +  S D    E N++  +DGE++AAS D
Sbjct: 60  PSSDASVSQFSMDYLQSEYNLNRYNDGESIAASRD 94


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 42  TLIALAALSVKAFGHHPGNRDTVEVKNRKYNAASSESSYLNKDNDSISAG 191
           T I  +A+  +AFG+H  N     + ++   +  +    LN+ ND +  G
Sbjct: 594 TYIDASAMD-EAFGYHNSNDSASSISSQDDYSKDNSDMDLNRANDEVFMG 642


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 374 SGCCREIVRQKQIRRSDRCDNRHK 303
           SGC ++   QKQ RR +  DN+ +
Sbjct: 5   SGCSKDDTIQKQNRRHNTVDNKQE 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,003,658
Number of Sequences: 5004
Number of extensions: 37549
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)