Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0646.Seq
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1007 - 25248653-25249078,25249956-25250021,25250108-252502... 35 0.036
01_06_0392 + 28964006-28964204,28964496-28964977,28965075-28965176 31 0.58
01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027 30 1.3
08_02_1160 - 24793708-24794796,24794888-24794951,24795028-247951... 29 1.8
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376... 29 2.3
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 29 2.3
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 3.1
03_05_0542 - 25397482-25397692,25398239-25398683,25398878-25399007 28 4.1
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 27 7.2
06_01_0630 - 4598804-4599295,4599627-4599965,4600002-4600039,460... 27 7.2
05_03_0060 - 7905455-7906216,7906723-7906887 27 7.2
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550... 27 9.5
12_02_0639 + 21443480-21443589,21444022-21444211,21444327-214444... 27 9.5
12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051... 27 9.5
10_08_0848 + 21035446-21035461,21035742-21036233,21036400-210369... 27 9.5
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561... 27 9.5
05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941... 27 9.5
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795... 27 9.5
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907... 27 9.5
02_05_1167 - 34638709-34639104,34640653-34642158 27 9.5
01_04_0076 + 15780981-15780996,15781277-15783109,15783186-157833... 27 9.5
01_01_0475 + 3500385-3500880,3501078-3501154,3501851-3502019,350... 27 9.5
>12_02_1007 -
25248653-25249078,25249956-25250021,25250108-25250260,
25250961-25251336,25252001-25252143
Length = 387
Score = 35.1 bits (77), Expect = 0.036
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 126 KYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLR 281
K AA+S ++ +NKD S +G + K + KSK S P CR+++ R
Sbjct: 160 KMPAAASPTTTMNKDETSDDSGERKKKKASSAAGKSKQAS-PRGCRSSQPYR 210
>01_06_0392 + 28964006-28964204,28964496-28964977,28965075-28965176
Length = 260
Score = 31.1 bits (67), Expect = 0.58
Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 13/134 (9%)
Frame = +3
Query: 57 AALSVKAFGHHP-GNRDTVEVKNRKYNAASSESSYLNKDNDSISAGAHRAKS-------- 209
A L K G HP G+ D N K NAA + S+ ++ D+ S G H S
Sbjct: 9 AKLKKKQQGDHPAGSDDGGNNNNNKNNAAENGSNDSSRRRDAASDGNHHLPSRPNVPHVD 68
Query: 210 -VEQSQDKSKYTSGPEACRTAEGLRTIKIPSKLMPIITAIRTADLL---LPDNLATAA*E 377
E S + S+ P A + K + +P+ +++ LP A A E
Sbjct: 69 VSEDSMESSEEMVTPRAAASEADEEERKAATSEVPVEVVEAGEEVMVDALPPEAAAGAQE 128
Query: 378 RETYITSLTVKQWP 419
++ +L V Q P
Sbjct: 129 QQGKAEALVVVQEP 142
>01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027
Length = 408
Score = 29.9 bits (64), Expect = 1.3
Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Frame = +2
Query: 233 QIYIWSRSVSYSGRSQNYKDSKQA------YADYHSDPNGGSASAGQSRDSSLRERNVHY 394
+I W S R + DS A D H P+GG A + S ++ V Y
Sbjct: 281 RIKTWGNSKRGFVRGVTFSDSTMAGVGNPIIIDQHYCPDGGCGGAARGSSSGIKISEVEY 340
Query: 395 V----SDGEAVAASSDARDENRSANIMLRPI 475
S VA S D N + I LR +
Sbjct: 341 ADVRGSSATPVAVSFDCSRSNPCSGIRLRDV 371
>08_02_1160 -
24793708-24794796,24794888-24794951,24795028-24795146,
24795496-24795612,24796365-24796406,24797342-24797506,
24797806-24797898,24798190-24798291,24798360-24798501,
24799301-24799651,24799741-24799839,24800019-24800230,
24800394-24800429
Length = 876
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +2
Query: 245 WSRSVSYSGRSQNYKDSKQAYADYHSDPNGGSASAGQSRDSSLRERNVHYVSDGEAVAAS 424
W+ + S + NY+ +YH+ GS + S D S E+ +S+ E
Sbjct: 626 WTDTNGRSRQPCNYEGRNDPTHEYHAGMGCGSDMSISSSDKSDCEKQTETMSNSEHGHTG 685
Query: 425 SDARDENRSANI 460
S+A D SA +
Sbjct: 686 SEAHDHVGSAPV 697
>05_04_0124 + 18232961-18236636,18236810-18237288,18237549-18237629,
18238033-18238041,18238096-18238248
Length = 1465
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +2
Query: 350 GQSRDSSLRERNVHYVSDGEAVAASSDARDENRSANIMLRPIGTLTXLY 496
G S+ SS R R ++Y+ +GE S+D +DE+ + +L G+LT L+
Sbjct: 918 GASQGSSRRVRTLYYIYNGER-EGSTDTKDEHILPDHLL-SWGSLTKLH 964
>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +2
Query: 350 GQSRDSSLRERNVHYVSDGEAVAASSDARDENRSANIMLRPIGTLTXLY 496
G S+ SS R R ++Y+ +GE S+D +DE+ + +L G+LT L+
Sbjct: 918 GASQGSSRRVRTLYYIYNGER-EGSTDTKDEHILPDHLL-SWGSLTKLH 964
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 VEVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQ-SQDKSKYTSGPE 254
VEV++ SE N+++ +AG H + +E DKSK T E
Sbjct: 2737 VEVRSTTEGQVESEVIETNEEDQHTTAGGHTEEQIENLHDDKSKETCSEE 2786
>03_05_0542 - 25397482-25397692,25398239-25398683,25398878-25399007
Length = 261
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 326 PNGGSASAGQSRDSSLRERNVHYVSDGEAVAA 421
P G S+S+ SRD E NV GEA A
Sbjct: 107 PKGSSSSSSSSRDKKEDEHNVSSQPQGEAAMA 138
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 296 KQAYADYHSDPNGGSASAGQSRDSSLRER 382
++ Y+D+H P GGS +G + ++ R R
Sbjct: 13 RRHYSDHHHFPPGGSGGSGGAASAAARSR 41
>06_01_0630 -
4598804-4599295,4599627-4599965,4600002-4600039,
4600145-4600460,4600541-4600794,4601586-4601651,
4603422-4603617
Length = 566
Score = 27.5 bits (58), Expect = 7.2
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Frame = +2
Query: 236 IYIWSRSVSYSGRSQNYKDSKQAYADYHSDPNGGSASAG----QSRDSSLRERNVHYVSD 403
+ +WS +V+ + + D A Y DPNG + G D LR
Sbjct: 19 LVVWSSAVAAAAAATTGGDVSVALEAYRLDPNGSGSRTGAITAAHGDGRLRRTKPR---S 75
Query: 404 GEAVAASSDARDENRSANI-MLRPIGTLTXLYGVSAIEVVP 523
A+A S E + N + R +G L YG VP
Sbjct: 76 RRAMAPSVQLGGETKRTNAGVRRDLGALPRGYGKELKIAVP 116
>05_03_0060 - 7905455-7906216,7906723-7906887
Length = 308
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/67 (34%), Positives = 30/67 (44%)
Frame = -1
Query: 439 IASVTGSGHCFTVRDVMYVSLSQAAVARLSGRSRSAVRIAVIIGISLLGIFIVLRPSAVR 260
I S GS F +RDV + L +AAV R A +S I ++ SAV
Sbjct: 71 ITSELGSDKNFGIRDVSTIGLVKAAVER-----------ACPGQVSCADIVVLAARSAVA 119
Query: 259 HASGPDV 239
HA GP +
Sbjct: 120 HAGGPRI 126
>12_02_0642 +
21454142-21454251,21454683-21454872,21454988-21455069,
21455224-21455802,21455854-21456909,21457133-21457251,
21457369-21457812
Length = 859
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 111 EVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLRTI 287
E KN++ A +E N D +S S G+ +V K K T+G + R+ G TI
Sbjct: 222 EQKNKEKEVARAEVDIENSDCESGSEGSDHGNNV--LVVKPKETTGSSSSRSVAGGHTI 278
>12_02_0639 +
21443480-21443589,21444022-21444211,21444327-21444408,
21444563-21445054,21445221-21446246,21446470-21446588,
21446706-21447149
Length = 820
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 111 EVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLRTI 287
E KN++ A +E N D +S S G+ +V K K T+G + R+ G TI
Sbjct: 222 EQKNKEKEVARAEVDIENSDCESGSEGSDHGNNV--LVVKPKETTGSSSSRSVAGGHTI 278
>12_02_0633 +
21402847-21402862,21403143-21404975,21405052-21405170,
21405288-21405722
Length = 800
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 111 EVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLRTI 287
E KN++ A +E N D +S S G+ +V K K T+G + R+ G TI
Sbjct: 100 EQKNKEKEVARAEVDIENSDCESGSEGSDHGNNV--LVVKPKETTGSSSSRSVAGGHTI 156
>10_08_0848 +
21035446-21035461,21035742-21036233,21036400-21036956,
21037084-21037539,21037886-21038302
Length = 645
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 111 EVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLRTI 287
E KN++ A +E N D +S S G+ +V K K T+G + R+ G TI
Sbjct: 100 EQKNKEKEVARAEVDIENSDCESGSEGSDHGNNV--LVVKPKETTGSSSSRSVAGGHTI 156
>06_03_1494 +
30554997-30555608,30555707-30555915,30556006-30556155,
30556254-30556312,30556852-30556961,30557216-30557322,
30557443-30557581,30557705-30557821,30557918-30558025,
30558221-30558292,30558783-30558948,30559044-30559165,
30559245-30559382,30559462-30559604,30559699-30559761,
30560107-30560170,30560238-30560373,30560478-30560551,
30560640-30560734,30560829-30560860,30560973-30561175
Length = 972
Score = 27.1 bits (57), Expect = 9.5
Identities = 21/81 (25%), Positives = 32/81 (39%)
Frame = +2
Query: 269 GRSQNYKDSKQAYADYHSDPNGGSASAGQSRDSSLRERNVHYVSDGEAVAASSDARDENR 448
GR Y ++Q YH +GG AG ++ + R V A+++ +
Sbjct: 28 GRGSYYPQAQQ----YHPQGHGGRGGAGYYHGAAPQPRGAMVVQQWRPATAAAEHLGHQQ 83
Query: 449 SANIMLRPIGTLTXLYGVSAI 511
N +RP YG SAI
Sbjct: 84 PYNSSVRP----QHYYGPSAI 100
>05_03_0187 +
9413575-9414895,9415014-9415289,9415513-9415631,
9415749-9416192
Length = 719
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 111 EVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLRTI 287
E KN++ A +E N D +S S G+ +V K K T+G + R+ G TI
Sbjct: 104 EQKNKEKEVARAEVDIENSDCESGSEGSDHGNNV--LVVKPKETTGSSSSRSVAGGHTI 160
>05_03_0065 -
7953414-7953845,7953963-7954081,7954158-7955990,
7957103-7957559
Length = 946
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 111 EVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLRTI 287
E KN++ A +E N D +S S G+ +V K K T+G + R+ G TI
Sbjct: 247 EQKNKEKEVARAEVDIENSDCESGSEGSDHGNNV--LVVKPKETTGSSSSRSVAGGHTI 303
>02_05_1241 -
35189111-35189389,35189604-35189711,35189982-35190713,
35190811-35191230,35191484-35191565,35191719-35192002,
35193104-35193256
Length = 685
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 344 SAGQSRDSSLRERNVHYVSDGEAVAASSDARD 439
+A +++SS +E+N+H +DG+ V D
Sbjct: 630 AASSTKNSSNQEKNIHGAADGDVVDDEGSGND 661
>02_05_1167 - 34638709-34639104,34640653-34642158
Length = 633
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/89 (22%), Positives = 38/89 (42%)
Frame = +2
Query: 263 YSGRSQNYKDSKQAYADYHSDPNGGSASAGQSRDSSLRERNVHYVSDGEAVAASSDARDE 442
+ G+ D K + A+ S G G+ ++SS +++ A+S D+
Sbjct: 395 WGGKKGTKNDEKPSKANQGSKDESGDLGKGKEKNSSKKKKG----------ASSGDSTKH 444
Query: 443 NRSANIMLRPIGTLTXLYGVSAIEVVPLV 529
LRP+ LT + + E++PL+
Sbjct: 445 ESEYKKGLRPVLWLTPDFPLKTDELIPLL 473
>01_04_0076 +
15780981-15780996,15781277-15783109,15783186-15783304,
15783422-15783724
Length = 756
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 111 EVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLRTI 287
E KN++ A +E N D +S S G+ +V K K T+G + R+ G TI
Sbjct: 100 EQKNKEKEVARAEVDIENSDCESGSEGSDHGNNV--LVVKPKETTGSSSSRSVAGGHTI 156
>01_01_0475 +
3500385-3500880,3501078-3501154,3501851-3502019,
3502385-3502473,3502601-3502765,3502841-3502918,
3503087-3503190,3503317-3503422
Length = 427
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 320 SDPNGGSASAGQSRDSSLRERNVHYVSDGEAVAASSDARDE 442
+DP GG G E ++ V GEA A+S+ +E
Sbjct: 55 ADPGGGPHQVGGGGGGGGGEVSIRIVGSGEAAGAASERGEE 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,893,573
Number of Sequences: 37544
Number of extensions: 269838
Number of successful extensions: 1018
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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