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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0646.Seq
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1007 - 25248653-25249078,25249956-25250021,25250108-252502...    35   0.036
01_06_0392 + 28964006-28964204,28964496-28964977,28965075-28965176     31   0.58 
01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027     30   1.3  
08_02_1160 - 24793708-24794796,24794888-24794951,24795028-247951...    29   1.8  
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376...    29   2.3  
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    29   2.3  
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    29   3.1  
03_05_0542 - 25397482-25397692,25398239-25398683,25398878-25399007     28   4.1  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    27   7.2  
06_01_0630 - 4598804-4599295,4599627-4599965,4600002-4600039,460...    27   7.2  
05_03_0060 - 7905455-7906216,7906723-7906887                           27   7.2  
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550...    27   9.5  
12_02_0639 + 21443480-21443589,21444022-21444211,21444327-214444...    27   9.5  
12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051...    27   9.5  
10_08_0848 + 21035446-21035461,21035742-21036233,21036400-210369...    27   9.5  
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561...    27   9.5  
05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941...    27   9.5  
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795...    27   9.5  
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907...    27   9.5  
02_05_1167 - 34638709-34639104,34640653-34642158                       27   9.5  
01_04_0076 + 15780981-15780996,15781277-15783109,15783186-157833...    27   9.5  
01_01_0475 + 3500385-3500880,3501078-3501154,3501851-3502019,350...    27   9.5  

>12_02_1007 -
           25248653-25249078,25249956-25250021,25250108-25250260,
           25250961-25251336,25252001-25252143
          Length = 387

 Score = 35.1 bits (77), Expect = 0.036
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 126 KYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLR 281
           K  AA+S ++ +NKD  S  +G  + K    +  KSK  S P  CR+++  R
Sbjct: 160 KMPAAASPTTTMNKDETSDDSGERKKKKASSAAGKSKQAS-PRGCRSSQPYR 210


>01_06_0392 + 28964006-28964204,28964496-28964977,28965075-28965176
          Length = 260

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 13/134 (9%)
 Frame = +3

Query: 57  AALSVKAFGHHP-GNRDTVEVKNRKYNAASSESSYLNKDNDSISAGAHRAKS-------- 209
           A L  K  G HP G+ D     N K NAA + S+  ++  D+ S G H   S        
Sbjct: 9   AKLKKKQQGDHPAGSDDGGNNNNNKNNAAENGSNDSSRRRDAASDGNHHLPSRPNVPHVD 68

Query: 210 -VEQSQDKSKYTSGPEACRTAEGLRTIKIPSKLMPIITAIRTADLL---LPDNLATAA*E 377
             E S + S+    P A  +       K  +  +P+       +++   LP   A  A E
Sbjct: 69  VSEDSMESSEEMVTPRAAASEADEEERKAATSEVPVEVVEAGEEVMVDALPPEAAAGAQE 128

Query: 378 RETYITSLTVKQWP 419
           ++    +L V Q P
Sbjct: 129 QQGKAEALVVVQEP 142


>01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027
          Length = 408

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
 Frame = +2

Query: 233 QIYIWSRSVSYSGRSQNYKDSKQA------YADYHSDPNGGSASAGQSRDSSLRERNVHY 394
           +I  W  S     R   + DS  A        D H  P+GG   A +   S ++   V Y
Sbjct: 281 RIKTWGNSKRGFVRGVTFSDSTMAGVGNPIIIDQHYCPDGGCGGAARGSSSGIKISEVEY 340

Query: 395 V----SDGEAVAASSDARDENRSANIMLRPI 475
                S    VA S D    N  + I LR +
Sbjct: 341 ADVRGSSATPVAVSFDCSRSNPCSGIRLRDV 371


>08_02_1160 -
           24793708-24794796,24794888-24794951,24795028-24795146,
           24795496-24795612,24796365-24796406,24797342-24797506,
           24797806-24797898,24798190-24798291,24798360-24798501,
           24799301-24799651,24799741-24799839,24800019-24800230,
           24800394-24800429
          Length = 876

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +2

Query: 245 WSRSVSYSGRSQNYKDSKQAYADYHSDPNGGSASAGQSRDSSLRERNVHYVSDGEAVAAS 424
           W+ +   S +  NY+       +YH+    GS  +  S D S  E+    +S+ E     
Sbjct: 626 WTDTNGRSRQPCNYEGRNDPTHEYHAGMGCGSDMSISSSDKSDCEKQTETMSNSEHGHTG 685

Query: 425 SDARDENRSANI 460
           S+A D   SA +
Sbjct: 686 SEAHDHVGSAPV 697


>05_04_0124 + 18232961-18236636,18236810-18237288,18237549-18237629,
            18238033-18238041,18238096-18238248
          Length = 1465

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +2

Query: 350  GQSRDSSLRERNVHYVSDGEAVAASSDARDENRSANIMLRPIGTLTXLY 496
            G S+ SS R R ++Y+ +GE    S+D +DE+   + +L   G+LT L+
Sbjct: 918  GASQGSSRRVRTLYYIYNGER-EGSTDTKDEHILPDHLL-SWGSLTKLH 964


>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
            18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +2

Query: 350  GQSRDSSLRERNVHYVSDGEAVAASSDARDENRSANIMLRPIGTLTXLY 496
            G S+ SS R R ++Y+ +GE    S+D +DE+   + +L   G+LT L+
Sbjct: 918  GASQGSSRRVRTLYYIYNGER-EGSTDTKDEHILPDHLL-SWGSLTKLH 964


>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 108  VEVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQ-SQDKSKYTSGPE 254
            VEV++       SE    N+++   +AG H  + +E    DKSK T   E
Sbjct: 2737 VEVRSTTEGQVESEVIETNEEDQHTTAGGHTEEQIENLHDDKSKETCSEE 2786


>03_05_0542 - 25397482-25397692,25398239-25398683,25398878-25399007
          Length = 261

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 326 PNGGSASAGQSRDSSLRERNVHYVSDGEAVAA 421
           P G S+S+  SRD    E NV     GEA  A
Sbjct: 107 PKGSSSSSSSSRDKKEDEHNVSSQPQGEAAMA 138


>06_03_0867 +
           25534760-25539620,25540662-25540857,25540957-25541104,
           25541673-25541751,25542151-25542238,25542330-25542600,
           25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 296 KQAYADYHSDPNGGSASAGQSRDSSLRER 382
           ++ Y+D+H  P GGS  +G +  ++ R R
Sbjct: 13  RRHYSDHHHFPPGGSGGSGGAASAAARSR 41


>06_01_0630 -
           4598804-4599295,4599627-4599965,4600002-4600039,
           4600145-4600460,4600541-4600794,4601586-4601651,
           4603422-4603617
          Length = 566

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
 Frame = +2

Query: 236 IYIWSRSVSYSGRSQNYKDSKQAYADYHSDPNGGSASAG----QSRDSSLRERNVHYVSD 403
           + +WS +V+ +  +    D   A   Y  DPNG  +  G       D  LR         
Sbjct: 19  LVVWSSAVAAAAAATTGGDVSVALEAYRLDPNGSGSRTGAITAAHGDGRLRRTKPR---S 75

Query: 404 GEAVAASSDARDENRSANI-MLRPIGTLTXLYGVSAIEVVP 523
             A+A S     E +  N  + R +G L   YG      VP
Sbjct: 76  RRAMAPSVQLGGETKRTNAGVRRDLGALPRGYGKELKIAVP 116


>05_03_0060 - 7905455-7906216,7906723-7906887
          Length = 308

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 23/67 (34%), Positives = 30/67 (44%)
 Frame = -1

Query: 439 IASVTGSGHCFTVRDVMYVSLSQAAVARLSGRSRSAVRIAVIIGISLLGIFIVLRPSAVR 260
           I S  GS   F +RDV  + L +AAV R           A    +S   I ++   SAV 
Sbjct: 71  ITSELGSDKNFGIRDVSTIGLVKAAVER-----------ACPGQVSCADIVVLAARSAVA 119

Query: 259 HASGPDV 239
           HA GP +
Sbjct: 120 HAGGPRI 126


>12_02_0642 +
           21454142-21454251,21454683-21454872,21454988-21455069,
           21455224-21455802,21455854-21456909,21457133-21457251,
           21457369-21457812
          Length = 859

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 111 EVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLRTI 287
           E KN++   A +E    N D +S S G+    +V     K K T+G  + R+  G  TI
Sbjct: 222 EQKNKEKEVARAEVDIENSDCESGSEGSDHGNNV--LVVKPKETTGSSSSRSVAGGHTI 278


>12_02_0639 +
           21443480-21443589,21444022-21444211,21444327-21444408,
           21444563-21445054,21445221-21446246,21446470-21446588,
           21446706-21447149
          Length = 820

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 111 EVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLRTI 287
           E KN++   A +E    N D +S S G+    +V     K K T+G  + R+  G  TI
Sbjct: 222 EQKNKEKEVARAEVDIENSDCESGSEGSDHGNNV--LVVKPKETTGSSSSRSVAGGHTI 278


>12_02_0633 +
           21402847-21402862,21403143-21404975,21405052-21405170,
           21405288-21405722
          Length = 800

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 111 EVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLRTI 287
           E KN++   A +E    N D +S S G+    +V     K K T+G  + R+  G  TI
Sbjct: 100 EQKNKEKEVARAEVDIENSDCESGSEGSDHGNNV--LVVKPKETTGSSSSRSVAGGHTI 156


>10_08_0848 +
           21035446-21035461,21035742-21036233,21036400-21036956,
           21037084-21037539,21037886-21038302
          Length = 645

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 111 EVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLRTI 287
           E KN++   A +E    N D +S S G+    +V     K K T+G  + R+  G  TI
Sbjct: 100 EQKNKEKEVARAEVDIENSDCESGSEGSDHGNNV--LVVKPKETTGSSSSRSVAGGHTI 156


>06_03_1494 +
           30554997-30555608,30555707-30555915,30556006-30556155,
           30556254-30556312,30556852-30556961,30557216-30557322,
           30557443-30557581,30557705-30557821,30557918-30558025,
           30558221-30558292,30558783-30558948,30559044-30559165,
           30559245-30559382,30559462-30559604,30559699-30559761,
           30560107-30560170,30560238-30560373,30560478-30560551,
           30560640-30560734,30560829-30560860,30560973-30561175
          Length = 972

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/81 (25%), Positives = 32/81 (39%)
 Frame = +2

Query: 269 GRSQNYKDSKQAYADYHSDPNGGSASAGQSRDSSLRERNVHYVSDGEAVAASSDARDENR 448
           GR   Y  ++Q    YH   +GG   AG    ++ + R    V       A+++     +
Sbjct: 28  GRGSYYPQAQQ----YHPQGHGGRGGAGYYHGAAPQPRGAMVVQQWRPATAAAEHLGHQQ 83

Query: 449 SANIMLRPIGTLTXLYGVSAI 511
             N  +RP       YG SAI
Sbjct: 84  PYNSSVRP----QHYYGPSAI 100


>05_03_0187 +
           9413575-9414895,9415014-9415289,9415513-9415631,
           9415749-9416192
          Length = 719

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 111 EVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLRTI 287
           E KN++   A +E    N D +S S G+    +V     K K T+G  + R+  G  TI
Sbjct: 104 EQKNKEKEVARAEVDIENSDCESGSEGSDHGNNV--LVVKPKETTGSSSSRSVAGGHTI 160


>05_03_0065 -
           7953414-7953845,7953963-7954081,7954158-7955990,
           7957103-7957559
          Length = 946

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 111 EVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLRTI 287
           E KN++   A +E    N D +S S G+    +V     K K T+G  + R+  G  TI
Sbjct: 247 EQKNKEKEVARAEVDIENSDCESGSEGSDHGNNV--LVVKPKETTGSSSSRSVAGGHTI 303


>02_05_1241 -
           35189111-35189389,35189604-35189711,35189982-35190713,
           35190811-35191230,35191484-35191565,35191719-35192002,
           35193104-35193256
          Length = 685

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 344 SAGQSRDSSLRERNVHYVSDGEAVAASSDARD 439
           +A  +++SS +E+N+H  +DG+ V       D
Sbjct: 630 AASSTKNSSNQEKNIHGAADGDVVDDEGSGND 661


>02_05_1167 - 34638709-34639104,34640653-34642158
          Length = 633

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/89 (22%), Positives = 38/89 (42%)
 Frame = +2

Query: 263 YSGRSQNYKDSKQAYADYHSDPNGGSASAGQSRDSSLRERNVHYVSDGEAVAASSDARDE 442
           + G+     D K + A+  S    G    G+ ++SS +++           A+S D+   
Sbjct: 395 WGGKKGTKNDEKPSKANQGSKDESGDLGKGKEKNSSKKKKG----------ASSGDSTKH 444

Query: 443 NRSANIMLRPIGTLTXLYGVSAIEVVPLV 529
                  LRP+  LT  + +   E++PL+
Sbjct: 445 ESEYKKGLRPVLWLTPDFPLKTDELIPLL 473


>01_04_0076 +
           15780981-15780996,15781277-15783109,15783186-15783304,
           15783422-15783724
          Length = 756

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 111 EVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEACRTAEGLRTI 287
           E KN++   A +E    N D +S S G+    +V     K K T+G  + R+  G  TI
Sbjct: 100 EQKNKEKEVARAEVDIENSDCESGSEGSDHGNNV--LVVKPKETTGSSSSRSVAGGHTI 156


>01_01_0475 +
           3500385-3500880,3501078-3501154,3501851-3502019,
           3502385-3502473,3502601-3502765,3502841-3502918,
           3503087-3503190,3503317-3503422
          Length = 427

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 320 SDPNGGSASAGQSRDSSLRERNVHYVSDGEAVAASSDARDE 442
           +DP GG    G        E ++  V  GEA  A+S+  +E
Sbjct: 55  ADPGGGPHQVGGGGGGGGGEVSIRIVGSGEAAGAASERGEE 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,893,573
Number of Sequences: 37544
Number of extensions: 269838
Number of successful extensions: 1018
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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