Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0646.Seq
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical pr...    33   0.13 
AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical ...    29   1.6  
U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z95559-14|CAJ76976.1|  338|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z95559-12|CAJ43917.1|  396|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z95559-11|CAB09005.2|  435|Caenorhabditis elegans Hypothetical p...    28   4.9  
AF067608-3|AAC17655.2|  302|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z81473-3|CAB03896.4|  514|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AY342388-1|AAQ19851.1|  514|Caenorhabditis elegans putative RNA-...    27   8.6  
AF016671-1|AAF02173.1|  621|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical
           protein ZK632.2 protein.
          Length = 710

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 72  KAFGHHPGNRDTVEVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQD 227
           + FGH     DT E   RK   +  E     K  D +SAG  ++++++Q  D
Sbjct: 401 EGFGHKRTETDTYESLCRKLEESKKEIIECQKHLDELSAGTKKSRTIDQGGD 452


>AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical
           protein T23B12.6 protein.
          Length = 670

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 141 SSESSYLNKDNDSISAGAHRAKSVEQSQDKSKY 239
           SSE+S  N  N S  +  HR  S +QS D S+Y
Sbjct: 153 SSETSTNNSKNKSNGSPRHRGHSKKQSTDMSRY 185


>U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical
           protein T25D1.2 protein.
          Length = 438

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +3

Query: 45  LIALAALSVKAFGHHPGNRDTVEVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQ 224
           L+ +A+  V  + +    R  + +      +A+S  +Y NK+N S     ++   V Q+ 
Sbjct: 129 LLHVASACVSRYSNLAFKRSLLSLDESVAESANSIWTY-NKNNFSTHHFCNKCGKVAQNS 187

Query: 225 DKSKYTSGPEA 257
            K KY  GP A
Sbjct: 188 KKCKYCGGPVA 198


>Z95559-14|CAJ76976.1|  338|Caenorhabditis elegans Hypothetical
           protein Y41E3.7c protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 272 RSQNYKD-SKQAYADYHSDPNGGSASAGQSRDSSLRERNVHYVSDGEA 412
           + Q+Y+    Q YA   + PNG   +  +S    +R  +   VSD EA
Sbjct: 97  QEQHYQQYMSQVYAQQSTTPNGAEMNPEESHQHQIRRDDDSDVSDDEA 144


>Z95559-12|CAJ43917.1|  396|Caenorhabditis elegans Hypothetical
           protein Y41E3.7b protein.
          Length = 396

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 272 RSQNYKD-SKQAYADYHSDPNGGSASAGQSRDSSLRERNVHYVSDGEA 412
           + Q+Y+    Q YA   + PNG   +  +S    +R  +   VSD EA
Sbjct: 155 QEQHYQQYMSQVYAQQSTTPNGAEMNPEESHQHQIRRDDDSDVSDDEA 202


>Z95559-11|CAB09005.2|  435|Caenorhabditis elegans Hypothetical
           protein Y41E3.7a protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 272 RSQNYKD-SKQAYADYHSDPNGGSASAGQSRDSSLRERNVHYVSDGEA 412
           + Q+Y+    Q YA   + PNG   +  +S    +R  +   VSD EA
Sbjct: 194 QEQHYQQYMSQVYAQQSTTPNGAEMNPEESHQHQIRRDDDSDVSDDEA 241


>AF067608-3|AAC17655.2|  302|Caenorhabditis elegans Hypothetical
           protein B0511.7 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 323 DPNGGSASAGQSRDSSLRERNVHYVSDGEAVAASSDARDENRSAN 457
           DP         +R  S+R +  H+V D   VAAS +  D   S N
Sbjct: 106 DPGTQFHLGASTRKYSVRLKTEHHVEDDPTVAASDEQLDHQTSYN 150


>Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical
           protein ZK757.1 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -1

Query: 373 QAAVARLSGRSRSAVRIAVIIGISLLGIFI 284
           Q AV R S ++  AVRI++ +G++L  +FI
Sbjct: 164 QCAVLRFS-KAMEAVRISLTLGLNLFAVFI 192


>Z81473-3|CAB03896.4|  514|Caenorhabditis elegans Hypothetical
           protein C17D12.2 protein.
          Length = 514

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -1

Query: 463 HYVGGSVFIASVTGSGHCFTVRDVMYVSLSQAAVARLSGRSRSAVRIAV 317
           H V   VF+   T    CF       +  SQAA+  ++G      R+ V
Sbjct: 454 HIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKV 502


>AY342388-1|AAQ19851.1|  514|Caenorhabditis elegans putative
           RNA-binding protein protein.
          Length = 514

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -1

Query: 463 HYVGGSVFIASVTGSGHCFTVRDVMYVSLSQAAVARLSGRSRSAVRIAV 317
           H V   VF+   T    CF       +  SQAA+  ++G      R+ V
Sbjct: 454 HIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKV 502


>AF016671-1|AAF02173.1|  621|Caenorhabditis elegans Hypothetical
           protein W09G10.6 protein.
          Length = 621

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 99  RDTVEVKNRKYNAASSESSYLNKDNDSISAGAH--RAKSVEQSQDKSKY 239
           +D    K++K N  ++ESS  +KD  S S+G+    AK + + Q    Y
Sbjct: 111 KDQASQKDQKLNLQANESSRNSKDQSSDSSGSKSGNAKVIMELQADGTY 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,337,573
Number of Sequences: 27780
Number of extensions: 214342
Number of successful extensions: 729
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)