Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0646.Seq
(538 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g12010.1 68418.m01404 expressed protein 35 0.030
At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N domain-... 29 1.5
At4g21020.1 68417.m03041 late embryogenesis abundant domain-cont... 29 2.0
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 29 2.6
At2g27460.1 68415.m03319 sec23/sec24 transport family protein we... 29 2.6
At5g06320.1 68418.m00708 harpin-induced family protein / HIN1 fa... 28 3.4
At4g21390.1 68417.m03090 S-locus lectin protein kinase family pr... 28 3.4
At3g11650.1 68416.m01428 harpin-induced family protein / HIN1 fa... 28 4.5
At3g30450.1 68416.m03852 hypothetical protein similar to At2g049... 27 6.0
At2g44380.1 68415.m05520 DC1 domain-containing protein highly si... 27 6.0
At5g52710.1 68418.m06543 heavy-metal-associated domain-containin... 27 7.9
At1g78600.1 68414.m09160 zinc finger (B-box type) family protein... 27 7.9
>At5g12010.1 68418.m01404 expressed protein
Length = 502
Score = 35.1 bits (77), Expect = 0.030
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 281 NYKDSKQAYADYHSDPNGGSASAGQSRDSSLRERNVHYVSDGEAVAASSDARDEN 445
NY+ + +DY+SD N A A +S D +L++ V AVAA+S+ E+
Sbjct: 78 NYRKRARTMSDYYSDLNDYYADAEESGDINLKKSRVSRAVASVAVAAASEIEAES 132
>At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 619
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 248 SRSVSYSGRSQNYKDSKQAYADYHSDPNGGSASAGQSRDSSLRERNVHYVSDGEAV-AAS 424
S S+ +GR ++ +S AD S N GS S G+S D + + + E + A
Sbjct: 57 SSSLHNNGRFRHIDESDSTGADCDSVSNNGSWS-GESEDHKEKVPSTSIAAKQEIIPGAD 115
Query: 425 SDARDENRSAN 457
+D RD+ R N
Sbjct: 116 NDKRDKMRLKN 126
>At4g21020.1 68417.m03041 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to SP|P23283 Desiccation-related
protein {Craterostigma plantagineum}; contains Pfam
profile PF02987: Late embryogenesis abundant protein
Length = 266
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 111 EVKNRKYNAASSESSYLNKDNDSISAGAHR-AKSVEQSQDKSK 236
+ K+ YNA Y + D ++ GA++ A E +++K+K
Sbjct: 113 KAKDTAYNAKEKAKDYAERTKDKVNEGAYKAADKAEDTKEKAK 155
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 425 WKRPLLHRQRRNVRFSLSGCCREIV--RQKQIRRSDRCDNRHK 303
WK L R+++NV F SG R +V ++K + R+ C+ K
Sbjct: 104 WKSRLRSRRKKNVGFQASGRQRRVVKGKRKLVFRNRACELSEK 146
>At2g27460.1 68415.m03319 sec23/sec24 transport family protein weak
similarity to SP|P53992 Protein transport protein Sec24C
(SEC24-related protein C) {Homo sapiens}; contains Pfam
domains PF04811: Sec23/Sec24 trunk domain, PF04815:
Sec23/Sec24 helical domain and PF04810: Sec23/Sec24 zinc
finger
Length = 745
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Frame = +3
Query: 3 DPKTANMRFVLCCTLIALAALSVK-----AFGHHPGNRDTVEVKNRKYNAASSESSYLNK 167
DP+ N++ ++CC A A + F H G + V++ +Y N
Sbjct: 404 DPQYENLQHIICCDSYATYAYDFEFADNTGFSRHSGEQPVVQIA-FQYTVVVPPEGLSNS 462
Query: 168 DNDSISAGAH 197
+ S S G H
Sbjct: 463 EMSSSSRGKH 472
>At5g06320.1 68418.m00708 harpin-induced family protein / HIN1
family protein / harpin-responsive family protein /
NDR1/HIN1-like protein 3 similar to harpin-induced
protein hin1 (GI:1619321)[Nicotiana tabacum]
Length = 231
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/24 (41%), Positives = 20/24 (83%)
Frame = -1
Query: 331 VRIAVIIGISLLGIFIVLRPSAVR 260
+ IAV++GI+ L I+++ RP+A++
Sbjct: 53 ITIAVLLGIAALIIWLIFRPNAIK 76
>At4g21390.1 68417.m03090 S-locus lectin protein kinase family
protein contains Pfam profiles: PF00954 S-locus
glycoprotein family, PF00069 protein kinase domain,
PF01453 lectin (probable mannose binding)
Length = 849
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/38 (31%), Positives = 27/38 (71%)
Frame = -1
Query: 391 MYVSLSQAAVARLSGRSRSAVRIAVIIGISLLGIFIVL 278
+++ L+ + V + +++ AV +AV++G+ L+GIF +L
Sbjct: 422 LHIRLADSEVGE-NRKTKIAVIVAVLVGVILIGIFALL 458
>At3g11650.1 68416.m01428 harpin-induced family protein / HIN1
family protein / harpin-responsive family protein /
NDR1/HIN1-like protein 2 identical to NDR1/HIN1-Like
protein 2 (GP:9502174) [Arabidopsis thaliana]; similar
to hin1 GB:CAA68848 [Nicotiana tabacum]
Length = 240
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/24 (37%), Positives = 20/24 (83%)
Frame = -1
Query: 331 VRIAVIIGISLLGIFIVLRPSAVR 260
+ +AVI+G++ L ++++ RP+AV+
Sbjct: 60 IAVAVILGVAALILWLIFRPNAVK 83
>At3g30450.1 68416.m03852 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At2g14140, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 800
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 93 GNRDTVEVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKS 233
G + VE K+ +YN A+ + +Y+N +D + A K +Q ++++
Sbjct: 514 GKEEKVE-KHDEYNDAADQEAYINLSDDEDNDTAPTEKESQQKKEET 559
>At2g44380.1 68415.m05520 DC1 domain-containing protein highly
similar to GP|2435515|AF024504; contains Pfam profile
PF03107: DC1 domain
Length = 247
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 305 YADYHSDPNGGSASAGQSRDSSLRERNVHYVSDGEAVAASSDARDENRSANIML 466
Y D+ S+ GG G++ + R +++ D E A +AR N + N +L
Sbjct: 183 YEDHESEKRGGGREEGEASSAVSRMKSLMKAQD-EMAALQLEARIRNDTNNAIL 235
>At5g52710.1 68418.m06543 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 451
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 245 WSRSVSYSGRSQNYKDSKQAYADYHSDPNGG-SASAGQSRDS 367
+SRS S SQ S AY+ Y + PN ++S +SR S
Sbjct: 373 FSRSSSAMDLSQTTSSSSVAYSSYSTTPNSSRNSSHSRSRSS 414
>At1g78600.1 68414.m09160 zinc finger (B-box type) family protein
similar to zinc finger protein GI:3618316 from [Oryza
sativa]
Length = 299
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 475 NWPEHYVGGSVFIASVTGS 419
NWP+H+ SVF+ +T S
Sbjct: 262 NWPKHFHHHSVFVPDITSS 280
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,720,132
Number of Sequences: 28952
Number of extensions: 201709
Number of successful extensions: 756
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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