Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0645.Seq
(598 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico... 91 1e-17
UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=... 89 6e-17
UniRef50_A2Q4S9 Cluster: RNA-directed DNA polymerase; n=1; Medic... 66 8e-10
UniRef50_Q8T5G5 Cluster: Polyprotein; n=35; Schistosoma japonicu... 47 4e-04
UniRef50_UPI0000E4A747 Cluster: PREDICTED: similar to endonuclea... 42 0.008
UniRef50_UPI0000E495D7 Cluster: PREDICTED: similar to endonuclea... 42 0.008
UniRef50_Q1HW07 Cluster: Reverse transcriptase; n=1; Penaeus mon... 42 0.015
UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea... 41 0.025
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea... 39 0.078
UniRef50_Q4T944 Cluster: Chromosome undetermined SCAF7642, whole... 38 0.14
UniRef50_Q4T1G8 Cluster: Chromosome undetermined SCAF10595, whol... 38 0.18
UniRef50_O99970 Cluster: Orf546; n=2; Porphyra purpurea|Rep: Orf... 38 0.18
UniRef50_Q4QQE8 Cluster: Endonuclease-reverse transcriptase; n=4... 38 0.18
UniRef50_Q90247 Cluster: Battrachocottus baikalensis orf1 and or... 38 0.24
UniRef50_Q2GUS1 Cluster: Putative uncharacterized protein; n=10;... 37 0.41
UniRef50_Q9YW31 Cluster: ORF MSV061 putative LINE reverse transc... 36 0.55
UniRef50_Q2HBK6 Cluster: Putative uncharacterized protein; n=1; ... 36 0.55
UniRef50_Q572J7 Cluster: Reverse transcriptase precursor, putati... 36 0.96
UniRef50_UPI0000E477B8 Cluster: PREDICTED: similar to endonuclea... 35 1.3
UniRef50_Q4P0U8 Cluster: Putative uncharacterized protein; n=1; ... 35 1.3
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea... 34 2.2
UniRef50_Q6L3J9 Cluster: Polyprotein, putative; n=1; Solanum dem... 34 2.2
UniRef50_Q4SWZ6 Cluster: Chromosome undetermined SCAF13279, whol... 34 2.9
UniRef50_Q93DS9 Cluster: Maturase-related protein; n=45; Strepto... 33 3.9
UniRef50_Q1Q0X4 Cluster: Similar to Group II intron encoded reve... 33 3.9
UniRef50_Q572K4 Cluster: Reverse transcriptase, putative; n=2; P... 33 3.9
UniRef50_A4PSF3 Cluster: RNA-directed DNA polymerase , related; ... 33 3.9
UniRef50_A5AXP0 Cluster: Putative uncharacterized protein; n=1; ... 33 5.1
UniRef50_A5AI88 Cluster: Putative uncharacterized protein; n=3; ... 33 5.1
UniRef50_UPI0000E47A7B Cluster: PREDICTED: similar to endonuclea... 33 6.7
UniRef50_A5B9Z9 Cluster: Putative uncharacterized protein; n=1; ... 33 6.7
UniRef50_Q88285 Cluster: Gag-pol polyprotein; n=3; Snakehead ret... 32 8.9
UniRef50_Q7NDI6 Cluster: Gll4249 protein; n=3; Cyanobacteria|Rep... 32 8.9
UniRef50_A1T776 Cluster: RNA-directed DNA polymerase; n=1; Mycob... 32 8.9
UniRef50_Q2HUN6 Cluster: RNA-directed DNA polymerase (Reverse tr... 32 8.9
UniRef50_Q4VZR2 Cluster: Putative reverse transcriptase; n=3; To... 32 8.9
UniRef50_Q1DQI8 Cluster: Putative uncharacterized protein; n=1; ... 32 8.9
UniRef50_Q64E53 Cluster: Prophage LambdaSa1 transcriptase/matura... 32 8.9
>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
eudicotyledons|Rep: Polyprotein, putative - Solanum
demissum (Wild potato)
Length = 868
Score = 91.5 bits (217), Expect = 1e-17
Identities = 45/93 (48%), Positives = 60/93 (64%)
Frame = -3
Query: 287 VRMLRWRYQRVSVVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANEIVLVGEER 108
VR + + V +GL QGS LSP+LF L+M LT IQE PWCMLFA++IVL+ E R
Sbjct: 389 VRTVGGDSEHFPVEIGLHQGSVLSPFLFALVMDELTRSIQETVPWCMLFADDIVLIDETR 448
Query: 107 PEA*MRLAK*KERLENVGMKISRTKTEHMFCDF 9
RL ++ LE+ G ++SRTKTE++ C F
Sbjct: 449 DRVNARLEVWRQTLESKGFRLSRTKTEYLGCKF 481
>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
Papilionoideae|Rep: Reverse transcriptase family member
- Glycine max (Soybean)
Length = 377
Score = 89.4 bits (212), Expect = 6e-17
Identities = 50/107 (46%), Positives = 63/107 (58%)
Frame = -3
Query: 329 IPAAYSSYAR*NQYVRMLRWRYQRVSVVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWC 150
I A Y R + VR + +GL QGS LSPYLF LI+ LT IQE AP C
Sbjct: 60 IRAIQDMYDRVSTSVRTQGGESDDFPITIGLHQGSTLSPYLFTLILDVLTEQIQEIAPRC 119
Query: 149 MLFANEIVLVGEERPEA*MRLAK*KERLENVGMKISRTKTEHMFCDF 9
MLFA++IVL+GE R E RL + LE G ++SR+K+E+M C F
Sbjct: 120 MLFADDIVLLGESREELNERLETWRRALETHGFRLSRSKSEYMECQF 166
Score = 49.2 bits (112), Expect = 7e-05
Identities = 25/71 (35%), Positives = 44/71 (61%)
Frame = -1
Query: 469 RMREESEVSQNQFGFMHMVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTS 290
R+ E+ ++Q +H++F+DLEKA+D V R++LW ++ +GV Y R I+ + R S
Sbjct: 15 RVMEQYRMAQQD---LHLIFIDLEKAYDRVPREILWKALEKKGVRVAYIRAIQDMYDRVS 71
Query: 289 TYVCSAGDTNE 257
T V + G ++
Sbjct: 72 TSVRTQGGESD 82
>UniRef50_A2Q4S9 Cluster: RNA-directed DNA polymerase; n=1; Medicago
truncatula|Rep: RNA-directed DNA polymerase - Medicago
truncatula (Barrel medic)
Length = 243
Score = 65.7 bits (153), Expect = 8e-10
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = -3
Query: 251 VVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANEIVLVGEERPE 102
+ +GL QGS LSPYLF L++ LT IQE AP CMLFA+++VL+GE R E
Sbjct: 190 ITIGLHQGSTLSPYLFTLVLDVLTEHIQELAPRCMLFADDVVLLGESREE 239
Score = 54.4 bits (125), Expect = 2e-06
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Frame = -1
Query: 523 GNKAHSHSTKAWEKVI--ASRMREESEVSQNQFGFMHMVFVDLEKAFDWVFRKVLW*NMK 350
G K SH+ K WE+V + +R E + +H+VF+DLEKA+D V R++LW +K
Sbjct: 96 GIKLMSHTMKLWERVDYGSDLLRRVMERYRTDKKDLHLVFIDLEKAYDRVPREILWKALK 155
Query: 349 VRGVPGKYQRLIRATHGRTSTYV-CSAGDT 263
+GV Y + I+ + ST V GDT
Sbjct: 156 KKGVRIAYIKAIQDMYEGASTCVRTQDGDT 185
>UniRef50_Q8T5G5 Cluster: Polyprotein; n=35; Schistosoma
japonicum|Rep: Polyprotein - Schistosoma japonicum
(Blood fluke)
Length = 1091
Score = 46.8 bits (106), Expect = 4e-04
Identities = 22/49 (44%), Positives = 33/49 (67%)
Frame = -1
Query: 415 VFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTSTYVCSAG 269
VF+DL+ AFD + RKV+W + ++GVP KY LI+A + T+ V + G
Sbjct: 708 VFLDLKAAFDSIDRKVMWQCLSLKGVPEKYINLIQALYSNTTCRVRAYG 756
>UniRef50_UPI0000E4A747 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 555
Score = 42.3 bits (95), Expect = 0.008
Identities = 23/76 (30%), Positives = 39/76 (51%)
Frame = -1
Query: 487 EKVIASRMREESEVSQNQFGFMHMVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRA 308
+ + R +E + N+ +++VFVD KAFD V R LW ++ G P K+ ++ +
Sbjct: 205 DMIFCLRQLQEKCIEHNRS--LYVVFVDFTKAFDTVGRTGLWELLRKYGCPEKFTGMVES 262
Query: 307 THGRTSTYVCSAGDTN 260
H V AG+T+
Sbjct: 263 LHTGMMAKVKEAGETS 278
>UniRef50_UPI0000E495D7 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=5;
Deuterostomia|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 604
Score = 42.3 bits (95), Expect = 0.008
Identities = 23/76 (30%), Positives = 39/76 (51%)
Frame = -1
Query: 487 EKVIASRMREESEVSQNQFGFMHMVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRA 308
+ + R +E + N+ +++VFVD KAFD V R LW ++ G P K+ ++ +
Sbjct: 206 DMIFCLRQLQEKCIEHNRS--LYVVFVDFTKAFDTVGRTGLWELLRKYGCPEKFTGMVES 263
Query: 307 THGRTSTYVCSAGDTN 260
H V AG+T+
Sbjct: 264 LHTGMMAKVKEAGETS 279
>UniRef50_Q1HW07 Cluster: Reverse transcriptase; n=1; Penaeus
monodon|Rep: Reverse transcriptase - Penaeus monodon
(Penoeid shrimp)
Length = 382
Score = 41.5 bits (93), Expect = 0.015
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = -1
Query: 412 FVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATH-GRTSTYVCSAGDTN 260
++DL+KAFD V R+ LW +++RG+P + LI + + G S C G +N
Sbjct: 252 YIDLKKAFDSVHRESLWEILRLRGIPSQIIGLIASLYTGTESAVKCGGGMSN 303
>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=5;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 1030
Score = 40.7 bits (91), Expect = 0.025
Identities = 22/77 (28%), Positives = 42/77 (54%)
Frame = -1
Query: 487 EKVIASRMREESEVSQNQFGFMHMVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRA 308
+++ R E + +N+ ++ ++D +KAFD V++K LW M G P K RL++A
Sbjct: 641 DQIFTLRQIAEKYLEKNRS--LYCCYIDFQKAFDSVWQKGLWKAMGCFGYPSKLIRLLQA 698
Query: 307 THGRTSTYVCSAGDTNE 257
+ ++ + V G+ E
Sbjct: 699 LYDQSQSTVRVNGELTE 715
>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 958
Score = 39.1 bits (87), Expect = 0.078
Identities = 23/77 (29%), Positives = 41/77 (53%)
Frame = -1
Query: 487 EKVIASRMREESEVSQNQFGFMHMVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRA 308
+++ R E + +NQ + F+D EKAFD V+++ LW M G KY L++A
Sbjct: 554 DQLFTLRQIMEKRLERNQS--LLCCFIDYEKAFDSVWQEGLWKAMNFFGYSSKYIHLLQA 611
Query: 307 THGRTSTYVCSAGDTNE 257
+ ++S+ V G+ +
Sbjct: 612 LYQQSSSAVRVNGELTD 628
>UniRef50_Q4T944 Cluster: Chromosome undetermined SCAF7642, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF7642,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 183
Score = 38.3 bits (85), Expect = 0.14
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = -3
Query: 215 PYLFILIMYALTTDIQEEAPWCMLFANEIVLVGEERPEA*MRLAK*KERLENVGMKISRT 36
P L ++M LT ++++E+PW +FA +IV+ E+ E E+LE + +
Sbjct: 19 PLLVAMVMDRLTDEVRQESPWTTMFAGDIVMCSREQVE---------EKLEERRFALESS 69
Query: 35 KTEH 24
KTE+
Sbjct: 70 KTEN 73
>UniRef50_Q4T1G8 Cluster: Chromosome undetermined SCAF10595, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF10595,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 94
Score = 37.9 bits (84), Expect = 0.18
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 406 DLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTSTYV-CSAGDTNE 257
DL+KA+ WV R+ LW MK GV KY + ++ + T V C+ G E
Sbjct: 39 DLKKAYGWVSREELWHCMKKSGVAEKYVKAVQDMYEHCKTGVRCAVGVIEE 89
>UniRef50_O99970 Cluster: Orf546; n=2; Porphyra purpurea|Rep: Orf546
- Porphyra purpurea
Length = 546
Score = 37.9 bits (84), Expect = 0.18
Identities = 18/72 (25%), Positives = 40/72 (55%)
Frame = -3
Query: 242 GLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANEIVLVGEERPEA*MRLAK*KERLE 63
G PQG +SP L + ++ + + + + + +A++ +++ E E K + L+
Sbjct: 222 GTPQGGIISPLLANIALHGMEKAVCKSGVYLIRYADDFLILCNEEKELSEAKNKIEIFLQ 281
Query: 62 NVGMKISRTKTE 27
N+G+K+S +KT+
Sbjct: 282 NLGLKLSESKTK 293
>UniRef50_Q4QQE8 Cluster: Endonuclease-reverse transcriptase; n=43;
Eumetazoa|Rep: Endonuclease-reverse transcriptase -
Schistosoma mansoni (Blood fluke)
Length = 992
Score = 37.9 bits (84), Expect = 0.18
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = -1
Query: 487 EKVIASRMREESEVSQNQFGFMHMVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRA 308
+++ R+ E + N +++ F+D EKAFD V R LW ++ GVP K +IR
Sbjct: 607 DQIATLRIIVEQSIEWNSS--LYINFIDYEKAFDSVDRTTLWKLLRHYGVPEKIVNIIRN 664
Query: 307 THGRTSTYVCSAGDTNE 257
++ + + G +
Sbjct: 665 SYDGLNCQIVHGGQLTD 681
>UniRef50_Q90247 Cluster: Battrachocottus baikalensis orf1 and orf2
genes,; n=1; Batrachocottus baicalensis|Rep:
Battrachocottus baikalensis orf1 and orf2 genes, -
Batrachocottus baicalensis
Length = 332
Score = 37.5 bits (83), Expect = 0.24
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = -3
Query: 293 QYVRMLRWRYQRVSVVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCML--FANEIVLV 120
QYVR+ RVS G PQG+ L+P+LF + T+D + + C L F+++ +V
Sbjct: 57 QYVRIRECESDRVSCSTGAPQGTVLAPFLFSI----YTSDFKHNSANCHLQKFSDDSAIV 112
Query: 119 G 117
G
Sbjct: 113 G 113
>UniRef50_Q2GUS1 Cluster: Putative uncharacterized protein; n=10;
Chaetomium globosum|Rep: Putative uncharacterized protein
- Chaetomium globosum (Soil fungus)
Length = 1559
Score = 36.7 bits (81), Expect = 0.41
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Frame = -3
Query: 254 SVVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCML--FANEI-VLVGEERPEA*MR 90
++ G+PQGS LSP LFIL + +L +++E P + FA++ +LV PEA +R
Sbjct: 1083 AIRAGVPQGSPLSPVLFILYISSLYRQLKDEHPHLAITGFADDTNLLVFGRNPEAHVR 1140
>UniRef50_Q9YW31 Cluster: ORF MSV061 putative LINE reverse
transcriptase, similar to Caenorhabditis elegans
GB:U00063; n=1; Melanoplus sanguinipes
entomopoxvirus|Rep: ORF MSV061 putative LINE reverse
transcriptase, similar to Caenorhabditis elegans
GB:U00063 - Melanoplus sanguinipes entomopoxvirus
(MsEPV)
Length = 531
Score = 36.3 bits (80), Expect = 0.55
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -1
Query: 451 EVSQNQFGFMHMVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTSTYVCS 275
E+ +N+ + F+D +KAFD V R++LW M + G P I++ + T V S
Sbjct: 224 EIIRNRKKETYFAFIDFKKAFDNVDREILWNIMHLHGYPPHLINAIKSLYENTRIIVKS 282
>UniRef50_Q2HBK6 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized protein
- Chaetomium globosum (Soil fungus)
Length = 1620
Score = 36.3 bits (80), Expect = 0.55
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Frame = -3
Query: 254 SVVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCML--FANEIVLVGEER-PEA*MRLA 84
++ G PQGS LSP LFIL + +L +++E P + FA++ L+ R PE +R
Sbjct: 1044 AIRAGFPQGSPLSPVLFILYIASLYKQLKDEHPHLAIVGFADDTNLLAFGRNPEVNIRQL 1103
Query: 83 K*K-----ERLENVGMKISRTKTEHMFCD 12
+ E+ GMK + K+E + C+
Sbjct: 1104 EGAWETCLRWAESRGMKFAAEKSELIHCN 1132
>UniRef50_Q572J7 Cluster: Reverse transcriptase precursor, putative;
n=1; Phytophthora infestans|Rep: Reverse transcriptase
precursor, putative - Phytophthora infestans (Potato
late blight fungus)
Length = 885
Score = 35.5 bits (78), Expect = 0.96
Identities = 15/65 (23%), Positives = 35/65 (53%)
Frame = -1
Query: 445 SQNQFGFMHMVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTSTYVCSAGD 266
S ++ ++ +D KA+D + R+ L ++ +G P K++ +++ATH T+ + G
Sbjct: 605 SMGEYERAQVLLLDFVKAYDSLDREFLHKVLEAKGFPSKFRAIVKATHENTTVKFMANGT 664
Query: 265 TNELV 251
+ +
Sbjct: 665 LSRAI 669
>UniRef50_UPI0000E477B8 Cluster: PREDICTED: similar to
endonuclease/reverse transcriptase; n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease/reverse transcriptase - Strongylocentrotus
purpuratus
Length = 467
Score = 35.1 bits (77), Expect = 1.3
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = -3
Query: 254 SVVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANEIVL 123
SV+ G+PQGS L P LF+L + +TT++ LFA++ V+
Sbjct: 163 SVLSGVPQGSVLGPMLFLLYVNDITTNVNSS---MRLFADDSVI 203
>UniRef50_Q4P0U8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 1276
Score = 35.1 bits (77), Expect = 1.3
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -1
Query: 424 MHMVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTSTYVCSAG 269
++++F+D EKA+D V K LW +K G+P + I+A + V G
Sbjct: 541 VYLLFIDQEKAYDRVDHKFLWRLLKQVGLPEPIRHAIKALYANVKLKVMVNG 592
>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase, partial; n=7;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase, partial -
Strongylocentrotus purpuratus
Length = 787
Score = 34.3 bits (75), Expect = 2.2
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 424 MHMVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTSTYVCSAGDTNE 257
+H+ FVD + AFD ++R+ LW ++ GV LI + + +T V G E
Sbjct: 167 IHLNFVDFKAAFDTIWREALWKCLRSIGVDKPLVDLIESMYKQTKCSVMVNGKITE 222
>UniRef50_Q6L3J9 Cluster: Polyprotein, putative; n=1; Solanum
demissum|Rep: Polyprotein, putative - Solanum demissum
(Wild potato)
Length = 139
Score = 34.3 bits (75), Expect = 2.2
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = -3
Query: 137 NEIVLVGEERPEA*MRLAK*KERLENVGMKISRTKTEHMFCDF 9
N+IVL+ E R R + L++ G+ +S+TKTE+M C F
Sbjct: 4 NDIVLINETRGGVNDRQEIWRSTLDSKGLTLSKTKTEYMECKF 46
>UniRef50_Q4SWZ6 Cluster: Chromosome undetermined SCAF13279, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF13279,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 93
Score = 33.9 bits (74), Expect = 2.9
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = -3
Query: 245 VGLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANEIVLV 120
VGL + S LSP+LF ++M +T +++ E+ W A++IV+V
Sbjct: 55 VGLHRVSALSPFLFAMMMDKMTDEVRRESLWT---ADDIVIV 93
>UniRef50_Q93DS9 Cluster: Maturase-related protein; n=45;
Streptococcus|Rep: Maturase-related protein -
Streptococcus agalactiae
Length = 436
Score = 33.5 bits (73), Expect = 3.9
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = -3
Query: 263 QRVSVVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANE-IVLVGEERPEA*MRL 87
QR +VG PQG LSP L +++ L +++ + +A++ ++ VG E +
Sbjct: 193 QRHKTLVGTPQGGNLSPLLSNIMLNELDKGLEKRGLRFVRYADDCVITVGSEAAAKRVMH 252
Query: 86 AK*KERLENVGMKISRTKTE 27
+ + +G+K++ TKT+
Sbjct: 253 SVSSYIEKRLGLKVNMTKTK 272
>UniRef50_Q1Q0X4 Cluster: Similar to Group II intron encoded reverse
transcriptase; n=6; Candidatus Kuenenia
stuttgartiensis|Rep: Similar to Group II intron encoded
reverse transcriptase - Candidatus Kuenenia
stuttgartiensis
Length = 298
Score = 33.5 bits (73), Expect = 3.9
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = -3
Query: 242 GLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANEIVLVGEERPEA*MRLAK*KERLE 63
G PQG +SP L LI + ++++ + +A++ V++ + + E L+ KE +
Sbjct: 192 GTPQGGVISPLLANLIGDIIDKELEKAGYKFVRYADDFVVMTKTKDELPAALSYVKEIIA 251
Query: 62 -NVGMKISRTKTE 27
+GMK+S KT+
Sbjct: 252 GKLGMKLSEDKTK 264
>UniRef50_Q572K4 Cluster: Reverse transcriptase, putative; n=2;
Phytophthora infestans|Rep: Reverse transcriptase,
putative - Phytophthora infestans (Potato late blight
fungus)
Length = 1513
Score = 33.5 bits (73), Expect = 3.9
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -1
Query: 418 MVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTSTYVCSAG 269
++ +D KA+D + R+ L ++ +G P K++ ++R TH T+ + G
Sbjct: 557 VLLLDFAKAYDSLDREFLHQVLEAKGFPPKFREIVRTTHEATTVQFMANG 606
>UniRef50_A4PSF3 Cluster: RNA-directed DNA polymerase , related;
n=1; Medicago truncatula|Rep: RNA-directed DNA
polymerase , related - Medicago truncatula (Barrel
medic)
Length = 405
Score = 33.5 bits (73), Expect = 3.9
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -3
Query: 242 GLPQGSFLSPYLFILIMYALTTDIQEE 162
GL QG LSPYLFIL++ L+T I +E
Sbjct: 20 GLRQGDPLSPYLFILVVEGLSTLIHKE 46
>UniRef50_A5AXP0 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 413
Score = 33.1 bits (72), Expect = 5.1
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = -3
Query: 248 VVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANEIVLVGEERPE 102
V GL QG LSPYLFIL+M AL+ I + + +I GEE +
Sbjct: 74 VGGLRQGDPLSPYLFILVMEALSNLIAKTKQGGFIKGFKIEGNGEEETQ 122
>UniRef50_A5AI88 Cluster: Putative uncharacterized protein; n=3;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 860
Score = 33.1 bits (72), Expect = 5.1
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = -3
Query: 254 SVVVGLPQGSFLSPYLFILIMYALTTDIQ--EEAPWCMLF-ANEIVLVGE 114
S+ GL QG LSPYLF+LIM A + I EE + F +EI+ VG+
Sbjct: 535 SMFRGLRQGDPLSPYLFVLIMEAFNSLISRAEEKGFIRGFKKSEIIPVGD 584
>UniRef50_UPI0000E47A7B Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 765
Score = 32.7 bits (71), Expect = 6.7
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -1
Query: 424 MHMVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTSTYV 281
+H+ FVD + AFD ++R+ LW ++ GV LI + + +T V
Sbjct: 715 IHLNFVDYKAAFDTIWREALWKCLRSIGVDKSLVDLIESMYKQTKCSV 762
>UniRef50_A5B9Z9 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 506
Score = 32.7 bits (71), Expect = 6.7
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = -3
Query: 257 VSVVVGLPQGSFLSPYLFILIMYALT 180
++ ++GL QG LSPYLF+LIM A +
Sbjct: 241 IAFLLGLRQGDPLSPYLFVLIMKAFS 266
>UniRef50_Q88285 Cluster: Gag-pol polyprotein; n=3; Snakehead
retrovirus|Rep: Gag-pol polyprotein - Snakehead
retrovirus
Length = 2017
Score = 32.3 bits (70), Expect = 8.9
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = -3
Query: 239 LPQGSFLSPYLFILIMY----ALTTDIQEEAPWCMLFANEIVLVGEERPEA*MRLAK*KE 72
LPQG SP +F +Y + T I+ + + + ++I+L+ E+R LA +
Sbjct: 928 LPQGFHASPGIFHQALYNGLASCKTAIESQGCKLLQYVDDILLMSEDRDHHLRSLAILLQ 987
Query: 71 RLENVGMKISRTKTEHMFC 15
L+++G+KI+ K+ FC
Sbjct: 988 GLKDLGVKINPKKSH--FC 1004
>UniRef50_Q7NDI6 Cluster: Gll4249 protein; n=3; Cyanobacteria|Rep:
Gll4249 protein - Gloeobacter violaceus
Length = 241
Score = 32.3 bits (70), Expect = 8.9
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 257 LVGIASGAYVRTGSTVRSSNKPLVFPWHPSHFHVSPQNLTENPIKRFFQINKHHVH 424
++G+ SGA + V + K LVF WHP L + +++ +IN+ + H
Sbjct: 10 VLGLESGA---SPEEVSQAYKDLVFVWHPDRVPTENTRLHQKAVEKLKEINRAYEH 62
>UniRef50_A1T776 Cluster: RNA-directed DNA polymerase; n=1;
Mycobacterium vanbaalenii PYR-1|Rep: RNA-directed DNA
polymerase - Mycobacterium vanbaalenii (strain DSM 7251
/ PYR-1)
Length = 454
Score = 32.3 bits (70), Expect = 8.9
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = -3
Query: 248 VVGLPQGSFLSPYLFILIMYALTTDI-QEEAPWCMLFANEIVLVGEERPEA*MRLAK*KE 72
V G PQG +SP L + ++ L T++ + + +A++ V++ +A LA E
Sbjct: 233 VAGTPQGGVISPLLANIYLHVLDTELARRNVGELVRYADDGVVLCRSAAQAEHALAAVGE 292
Query: 71 RLENVGMKISRTKTE 27
L ++G+++ KT+
Sbjct: 293 ILASLGLRLHPDKTK 307
>UniRef50_Q2HUN6 Cluster: RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H; n=3; Medicago
truncatula|Rep: RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H - Medicago truncatula
(Barrel medic)
Length = 1296
Score = 32.3 bits (70), Expect = 8.9
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = -3
Query: 242 GLPQGSFLSPYLFILIMYALTTDIQE 165
GL QG LSPYLFIL M L+ IQ+
Sbjct: 634 GLRQGDPLSPYLFILCMEKLSVAIQD 659
>UniRef50_Q4VZR2 Cluster: Putative reverse transcriptase; n=3;
Toxorhynchites brevipalpis|Rep: Putative reverse
transcriptase - Toxorhynchites brevipalpis
Length = 134
Score = 32.3 bits (70), Expect = 8.9
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 415 VFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTSTYV 281
VF+DL KAFD RK+L + GV G+ + R+ S +V
Sbjct: 70 VFLDLSKAFDTCDRKILIRRLSEMGVRGRSMQWFRSFFNNRSQFV 114
>UniRef50_Q1DQI8 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 201
Score = 32.3 bits (70), Expect = 8.9
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = -3
Query: 263 QRVSVVVGLPQGSFLSPYLF-ILIMYALTTD 174
+++S+ +G+PQGS LSP LF I I++ D
Sbjct: 49 EKISINIGIPQGSSLSPILFSIYIIFLFKND 79
>UniRef50_Q64E53 Cluster: Prophage LambdaSa1 transcriptase/maturase
family protein; n=1; uncultured archaeon GZfos14B8|Rep:
Prophage LambdaSa1 transcriptase/maturase family protein
- uncultured archaeon GZfos14B8
Length = 430
Score = 32.3 bits (70), Expect = 8.9
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = -3
Query: 260 RVSVVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANEIVLVGEERPEA*MRLAK 81
R VVG PQG +SP L + ++ + E + +A++++++ EA ++
Sbjct: 232 RAKNVVGTPQGGVISPLLANIYLHYFDERMAELGFEVVRYADDVLVLCGSEEEAEEAISH 291
Query: 80 *KERLENVGMKISRTKTE 27
KE LE + + + KT+
Sbjct: 292 VKEILEELELTLHPQKTK 309
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,816,326
Number of Sequences: 1657284
Number of extensions: 12634554
Number of successful extensions: 31038
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 30027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31029
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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