Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0645.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   3.6  
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.6  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   4.8  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    25   6.3  

>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 457 ESEVSQNQFGFMHMVFVDLEKAFDWVFRKVLW 362
           E   S N F F  M+ +  ++ FDW     LW
Sbjct: 595 EKTDSSNLFCFFRMLLIYFKREFDWEVLLKLW 626


>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 478 IASRMREESEVSQNQFGFMHMVFVDLEKAFDWVFRK 371
           I+ +  ++ E+ QNQF +     ++ EK  D +FRK
Sbjct: 115 ISLKELKDIEIYQNQFHYSAYEILEEEKILDNIFRK 150


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 290 YVRMLRWRYQRVSVVVGLPQGSFLSPYLFILIMYALTTDIQ 168
           Y+   R++Y     +VG PQGS +SP L  + ++ L   I+
Sbjct: 408 YLTENRYKYD----IVGTPQGSIVSPILANIYLHQLDEFIE 444


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 287 VRMLRWRYQRVSVVVGLPQGSFLSPYLFILIMY 189
           VR+L WR+     +  +P    ++PY+   I Y
Sbjct: 180 VRVLVWRHDNEESLANIPVTQLVNPYIEKAIQY 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,296
Number of Sequences: 5004
Number of extensions: 54100
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)